Variant report

Variant	rs2747674
Chromosome Location	chr6:24917961-24917962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2064524	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2207399	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2493331	0.91[ASN][1000 genomes]
rs2747675	0.97[ASN][1000 genomes]
rs2747676	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2747677	0.82[ASN][1000 genomes]
rs2817727	0.82[ASN][1000 genomes]
rs2817731	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817733	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932494	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24909600-24918000	Weak transcription	Dnd41	blood
2	chr6:24912400-24918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:24912400-24918200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:24912400-24919200	Weak transcription	Left Ventricle	heart
5	chr6:24912400-24919600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:24912400-24926600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:24912600-24918000	Weak transcription	HSMMtube	muscle
8	chr6:24912600-24918800	Weak transcription	GM12878-XiMat	blood
9	chr6:24912600-24919400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:24912800-24918200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:24913000-24918600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:24913000-24919000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:24913000-24919000	Weak transcription	Spleen	Spleen
14	chr6:24913200-24918800	Genic enhancers	Primary B cells from cord blood	blood
15	chr6:24913400-24919000	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr6:24913400-24922200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:24913600-24918800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:24913600-24927400	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr6:24914000-24918400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:24914200-24918200	Weak transcription	Thymus	Thymus
21	chr6:24914200-24919200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:24914600-24920000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:24915000-24918600	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:24915800-24919200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:24916000-24919000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:24916000-24919400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:24916000-24922000	Genic enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:24916200-24919000	Genic enhancers	Primary T cells from cord blood	blood
29	chr6:24916200-24919000	Weak transcription	Right Atrium	heart
30	chr6:24916600-24918600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:24916600-24918800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:24916600-24918800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr6:24916800-24918200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:24916800-24918800	Weak transcription	Fetal Heart	heart
35	chr6:24917000-24918000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr6:24917000-24918000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:24917000-24918200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:24917000-24919200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:24917200-24918400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:24917200-24918600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:24917600-24918800	Enhancers	Fetal Thymus	thymus
42	chr6:24917600-24919000	Genic enhancers	Monocytes-CD14+_RO01746	blood
43	chr6:24917600-24919200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
44	chr6:24917600-24921400	Enhancers	Brain Germinal Matrix	brain
45	chr6:24917600-24922000	Enhancers	Fetal Muscle Leg	muscle
46	chr6:24917800-24918400	Enhancers	Fetal Muscle Trunk	muscle
47	chr6:24917800-24918800	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr6:24917800-24921200	Enhancers	Psoas Muscle	Psoas

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