Variant report

Variant	rs274846
Chromosome Location	chr2:145916491-145916492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs274842	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787433	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1004846	chr2:145852801-145919056	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145914000-145938600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:145914400-145917600	Enhancers	NHLF	lung
3	chr2:145914800-145917600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:145915000-145916600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:145915200-145916600	Enhancers	HSMM	muscle
6	chr2:145916000-145917000	Weak transcription	HSMMtube	muscle
7	chr2:145916200-145916600	Enhancers	A549	lung
8	chr2:145916200-145917200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:145916200-145917200	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:145916200-145917200	Weak transcription	Ovary	ovary
11	chr2:145916200-145917200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:145916200-145917200	Weak transcription	Spleen	Spleen
13	chr2:145916200-145918600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:145916200-145929000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:145916400-145916800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:145916400-145916800	Weak transcription	Fetal Stomach	stomach
17	chr2:145916400-145916800	Weak transcription	Stomach Mucosa	stomach
18	chr2:145916400-145917800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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