Variant report

Variant	rs2755170
Chromosome Location	chr11:34286823-34286824
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34281972..34284178-chr11:34286435..34290431,3	K562	blood:
2	chr11:34284799..34287708-chr11:34289917..34291890,2	K562	blood:
3	chr11:34286604..34290357-chr11:34293722..34296590,3	MCF-7	breast:
4	chr11:34285128..34287533-chr11:34298437..34301296,2	MCF-7	breast:
5	chr11:34278645..34281276-chr11:34285188..34287550,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12289607	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes]
rs12290980	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897206	chr11:34253421-34337564	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34274000-34287400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:34274000-34290400	Weak transcription	HSMMtube	muscle
3	chr11:34274200-34287600	Weak transcription	HSMM	muscle
4	chr11:34274200-34288800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:34282400-34287800	Weak transcription	Fetal Brain Female	brain
6	chr11:34282800-34287000	Enhancers	Fetal Lung	lung
7	chr11:34282800-34288000	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:34282800-34291400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:34283000-34288000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:34283000-34288600	Enhancers	HepG2	liver
11	chr11:34283200-34287200	Enhancers	Brain Angular Gyrus	brain
12	chr11:34283200-34289000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:34283200-34290200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:34283400-34287000	Enhancers	Left Ventricle	heart
15	chr11:34283400-34288000	Enhancers	HMEC	breast
16	chr11:34283400-34289000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:34283400-34289000	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:34283400-34289000	Enhancers	Right Atrium	heart
19	chr11:34283600-34289200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:34283600-34291800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:34284000-34289000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:34284400-34287800	Weak transcription	Fetal Kidney	kidney
23	chr11:34284400-34288400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:34284400-34288800	Enhancers	Brain Anterior Caudate	brain
25	chr11:34284400-34289200	Enhancers	Brain Substantia Nigra	brain
26	chr11:34284600-34288200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr11:34284800-34287800	Enhancers	Brain Hippocampus Middle	brain
28	chr11:34284800-34288000	Weak transcription	Aorta	Aorta
29	chr11:34285000-34288000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:34285200-34287600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:34285200-34287800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:34285400-34287600	Weak transcription	Fetal Brain Male	brain
33	chr11:34285400-34287800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:34285400-34287800	Weak transcription	Thymus	Thymus
35	chr11:34285400-34288000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:34285400-34288000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:34285400-34288600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr11:34285400-34288600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:34285400-34288800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:34285400-34290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:34285400-34296400	Weak transcription	Gastric	stomach
42	chr11:34285400-34296400	Weak transcription	Right Ventricle	heart
43	chr11:34285600-34287600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:34285600-34288000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:34285600-34288400	Weak transcription	Esophagus	oesophagus
46	chr11:34285600-34288600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:34285600-34288600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:34285600-34293200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:34285600-34296000	Weak transcription	Fetal Heart	heart
50	chr11:34285600-34296200	Weak transcription	Stomach Mucosa	stomach

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