Variant report

Variant	rs2758148
Chromosome Location	chr6:134483116-134483117
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134477847..134480487-chr6:134481684..134484285,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1623002	0.81[ASN][1000 genomes]
rs2027175	0.81[ASN][1000 genomes]
rs2758145	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv348798	chr6:134475504-134485232	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134476800-134495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134480200-134487800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:134480200-134495400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:134481400-134483200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:134481400-134484800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:134482200-134483600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:134482200-134488000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:134482200-134489000	Weak transcription	HSMM	muscle
9	chr6:134482200-134489400	Weak transcription	NHDF-Ad	bronchial
10	chr6:134482400-134488800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:134482400-134490000	Weak transcription	Fetal Kidney	kidney
12	chr6:134482600-134483600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:134482600-134488600	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:134482600-134488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:134482600-134488800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:134482600-134488800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:134482600-134489000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:134482600-134489000	Weak transcription	Osteobl	bone
19	chr6:134482600-134489200	Weak transcription	HUVEC	blood vessel
20	chr6:134482600-134490800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:134482800-134483600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:134482800-134485000	Enhancers	Hela-S3	cervix
23	chr6:134482800-134487800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:134482800-134488800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:134482800-134488800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:134482800-134488800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:134482800-134488800	Weak transcription	Thymus	Thymus
28	chr6:134482800-134488800	Weak transcription	NH-A	brain
29	chr6:134482800-134489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:134482800-134489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:134482800-134489200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:134482800-134489200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:134482800-134489400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:134482800-134490000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:134482800-134490000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:134482800-134490400	Weak transcription	A549	lung
37	chr6:134482800-134490600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:134482800-134490800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:134482800-134491000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:134483000-134483200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:134483000-134488000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:134483000-134488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:134483000-134488800	Weak transcription	Fetal Intestine Small	intestine
44	chr6:134483000-134488800	Weak transcription	HMEC	breast
45	chr6:134483000-134489000	Weak transcription	Fetal Intestine Large	intestine
46	chr6:134483000-134489000	Weak transcription	NHEK	skin
47	chr6:134483000-134489600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:134483000-134490200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:134483000-134490800	Weak transcription	H9 Cell Line	embryonic stem cell

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