Variant report

Variant	rs2758216
Chromosome Location	chr13:29515465-29515466
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs189009	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs327124	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs327125	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs327126	0.96[EUR][1000 genomes]
rs327127	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs327128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs327129	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs327130	0.96[ASN][1000 genomes]
rs327131	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv561390	chr13:29486244-29563080	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29510800-29516800	Weak transcription	Left Ventricle	heart
2	chr13:29513600-29516400	Weak transcription	Fetal Heart	heart
3	chr13:29514400-29516000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:29514400-29516600	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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