Variant report

Variant	rs2758227
Chromosome Location	chr6:64204703-64204704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1779783	1.00[AFR][1000 genomes]
rs2758246	1.00[AFR][1000 genomes]
rs2800037	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv970135	chr6:64200126-64215926	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64201400-64207200	Enhancers	Hela-S3	cervix
2	chr6:64203000-64206000	Weak transcription	HepG2	liver
3	chr6:64203000-64207600	Weak transcription	Stomach Mucosa	stomach
4	chr6:64203200-64207200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:64203200-64209600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:64203400-64205200	Weak transcription	Fetal Intestine Large	intestine
7	chr6:64203600-64205400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:64203600-64206800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:64203800-64205800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:64203800-64206200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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