Variant report

Variant	rs276006
Chromosome Location	chr12:59923403-59923404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr12:59923345-59923478	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000265430	TF binding region
ENSG00000266724	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10506395	0.82[EUR][1000 genomes]
rs10732745	0.84[EUR][1000 genomes]
rs10735880	0.84[EUR][1000 genomes]
rs10735881	0.82[EUR][1000 genomes]
rs10747847	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10747848	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10747850	0.84[EUR][1000 genomes]
rs10747851	0.82[EUR][1000 genomes]
rs10747852	0.82[EUR][1000 genomes]
rs10783988	0.82[EUR][1000 genomes]
rs10877315	0.82[EUR][1000 genomes]
rs11173090	0.82[EUR][1000 genomes]
rs1497470	0.82[EUR][1000 genomes]
rs1966281	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2132871	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2132873	0.82[EUR][1000 genomes]
rs2646311	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2671854	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs276008	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106580	0.82[EUR][1000 genomes]
rs35986083	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4019983	0.82[EUR][1000 genomes]
rs420644	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421780	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536269	0.80[EUR][1000 genomes]
rs4635118	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4760291	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4760292	0.81[EUR][1000 genomes]
rs4760293	0.82[EUR][1000 genomes]
rs4760294	0.80[EUR][1000 genomes]
rs6581255	0.84[EUR][1000 genomes]
rs6581256	0.84[EUR][1000 genomes]
rs6581257	0.84[EUR][1000 genomes]
rs6581258	0.84[EUR][1000 genomes]
rs6581259	0.84[EUR][1000 genomes]
rs6581260	0.84[EUR][1000 genomes]
rs6581261	0.84[EUR][1000 genomes]
rs7133515	0.82[EUR][1000 genomes]
rs7133612	0.82[EUR][1000 genomes]
rs7303302	0.82[EUR][1000 genomes]
rs7970605	0.81[EUR][1000 genomes]
rs7973601	0.89[ASN][1000 genomes]
rs7975216	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762982	chr12:59659871-60000135	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1042271	chr12:59668468-59993468	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1038467	chr12:59680717-59999008	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv541507	chr12:59680717-59999008	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1049084	chr12:59700333-59993468	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv899129	chr12:59820966-59941423	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv899130	chr12:59895548-59970631	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1846651	chr12:59909653-59946206	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1826200	chr12:59916767-59946206	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1831161	chr12:59916767-59969435	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv1827166	chr12:59916767-59971821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv2600025	chr12:59921061-59939592	Inactive region	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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