Variant report

Variant	rs2762070
Chromosome Location	chr13:38490885-38490886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1099271	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1337603	0.83[EUR][1000 genomes]
rs1337604	0.82[EUR][1000 genomes]
rs9315528	0.83[EUR][1000 genomes]
rs9532135	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899997	chr13:38480878-38518459	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38484200-38494200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38488200-38494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:38488400-38491000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:38489200-38491000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr13:38489200-38492200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:38489200-38492400	Active TSS	H1 Cell Line	embryonic stem cell
7	chr13:38489200-38494000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:38489400-38494000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:38489600-38491800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr13:38489800-38492200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:38490400-38491400	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr13:38490400-38491800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:38490400-38493400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr13:38490600-38491000	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr13:38490600-38492400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr13:38490800-38491000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr13:38490800-38491200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:38490800-38493000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links