Variant report

Variant	rs2762110
Chromosome Location	chr13:94051516-94051517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:94051470-94051520	HAEpiC	amniotic membrane:	n/a
2	chr13:94051470-94051520	HCT-116	colon:	n/a
3	chr13:94051470-94051520	HNPCEpiC	eye:	n/a
4	chr13:94051470-94051520	Hela-S3	cervix:	n/a
5	chr13:94051470-94051520	PANC-1	pancreas:	n/a
6	chr13:94051470-94051520	MCF10A-Er-Src	breast:	n/a
7	chr13:94051470-94051520	IMR90	lung:	fetal
8	chr13:94051470-94051520	HRPEpiC	eye:	n/a
9	chr13:94051470-94051520	ProgFib	skin:	n/a
10	chr13:94051470-94051520	GM19239	blood:	n/a
11	chr13:94051470-94051520	SK-N-SH	brain:	n/a
12	chr13:94051470-94051520	BJ	skin:	n/a
13	chr13:94051470-94051520	HIPEpiC	eye:	n/a
14	chr13:94051470-94051520	HCF	heart:	n/a
15	chr13:94051470-94051520	AG09309	skin:	n/a
16	chr13:94051470-94051520	HRCEpiC	kidney:	n/a
17	chr13:94051470-94051520	GM06990	blood:	n/a
18	chr13:94051470-94051520	RPTEC	kidney:	n/a
19	chr13:94051470-94051520	PrEC	prostate:	n/a
20	chr13:94051470-94051520	NT2-D1	testis:	n/a
21	chr13:94051470-94051520	A549	lung:	n/a
22	chr13:94051470-94051520	NHDF-neo	bronchial:	n/a
23	chr13:94051470-94051520	ovcar-3	ovarian:	n/a
24	chr13:94051470-94051520	AoSMC	blood vessel:	n/a
25	chr13:94051470-94051520	HCM	heart:	n/a
26	chr13:94051470-94051520	BE2_C	brain:	n/a
27	chr13:94051470-94051520	HEEpiC	esophagus:	n/a
28	chr13:94051470-94051520	Jurkat	blood:	n/a
29	chr13:94051470-94051520	GM12878	blood:	n/a
30	chr13:94051470-94051520	HL-60	blood:	n/a
31	chr13:94051470-94051520	SAEC	small airway:	n/a
32	chr13:94051470-94051520	SK-N-SH_RA	brain:	n/a
33	chr13:94051470-94051520	LNCaP	prostate:	n/a
34	chr13:94051470-94051520	T-47D	breast:	n/a
35	chr13:94051470-94051520	PFSK-1	brain:	n/a
36	chr13:94051470-94051520	GM12892	blood:	n/a
37	chr13:94051470-94051520	HUVEC	blood vessel:	n/a
38	chr13:94051470-94051520	HEK293	kidney:	embryo
39	chr13:94051470-94051520	HRE	kidney:	n/a
40	chr13:94051470-94051520	ECC-1	luminal epithelium:	n/a
41	chr13:94051470-94051520	AG10803	skin:	n/a
42	chr13:94051470-94051520	AG04449	skin:	fetal
43	chr13:94051470-94051520	CMK	blood:	n/a
44	chr13:94051470-94051520	K562	blood:	n/a
45	chr13:94051470-94051520	HPAEpiC	pulmonary alveolar:	n/a
46	chr13:94051470-94051520	SK-N-MC	brain:	n/a
47	chr13:94051470-94051520	AG04450	lung:	fetal
48	chr13:94051470-94051520	NHBE	bronchial:	n/a
49	chr13:94051470-94051520	AG09319	gingival:	n/a
50	chr13:94051470-94051520	HepG2	liver:	n/a

No data

Variant related genes	Relation type
HNRNPA1P29	CpG island

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11617476	1.00[JPT][hapmap]
rs1323971	0.84[EUR][1000 genomes]
rs1323975	1.00[JPT][hapmap]
rs1323985	1.00[JPT][hapmap]
rs1323987	0.86[CHB][hapmap]
rs1323988	1.00[JPT][hapmap]
rs1373835	1.00[JPT][hapmap]
rs1408209	1.00[JPT][hapmap]
rs1408219	1.00[JPT][hapmap]
rs2762095	1.00[JPT][hapmap]
rs2762097	1.00[JPT][hapmap]
rs2762100	1.00[JPT][hapmap]
rs2762104	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2762105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2762106	1.00[JPT][hapmap]
rs2762107	1.00[JPT][hapmap]
rs2762109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2762111	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2762114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2762116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2762117	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2762119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813596	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813608	0.81[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2813609	1.00[JPT][hapmap]
rs2813610	1.00[JPT][hapmap]
rs2813615	1.00[JPT][hapmap]
rs4142601	1.00[JPT][hapmap]
rs4771874	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs4773741	1.00[JPT][hapmap]
rs4773742	1.00[JPT][hapmap]
rs66460753	0.84[EUR][1000 genomes]
rs7324202	1.00[JPT][hapmap]
rs7336981	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7338959	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7982827	1.00[JPT][hapmap]
rs7992272	0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs7992679	1.00[JPT][hapmap]
rs8001600	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9301876	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs9524017	1.00[JPT][hapmap]
rs9524021	1.00[JPT][hapmap]
rs9524026	0.84[EUR][1000 genomes]
rs9524027	0.91[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs9524068	0.82[EUR][1000 genomes]
rs9561321	1.00[JPT][hapmap]
rs995811	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94046600-94052400	Weak transcription	Fetal Brain Male	brain
2	chr13:94047800-94057200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:94050200-94051800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:94050600-94051600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:94050600-94052000	Enhancers	A549	lung
6	chr13:94050800-94051600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:94050800-94053000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:94051200-94051600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:94051200-94052200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:94051200-94052200	Enhancers	HepG2	liver
11	chr13:94051400-94051600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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