Variant report

Variant	rs2762115
Chromosome Location	chr13:94046788-94046789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10508000	0.81[EUR][1000 genomes]
rs10508001	0.81[EUR][1000 genomes]
rs10508002	0.81[EUR][1000 genomes]
rs10508003	0.81[EUR][1000 genomes]
rs10508004	0.80[EUR][1000 genomes]
rs10508005	0.80[EUR][1000 genomes]
rs10851334	0.81[EUR][1000 genomes]
rs11619994	0.80[EUR][1000 genomes]
rs11838734	0.80[EUR][1000 genomes]
rs11841335	0.80[EUR][1000 genomes]
rs11843793	0.80[EUR][1000 genomes]
rs12854387	0.81[EUR][1000 genomes]
rs12855239	0.81[EUR][1000 genomes]
rs12855671	0.80[EUR][1000 genomes]
rs12860734	0.80[EUR][1000 genomes]
rs12866595	0.80[EUR][1000 genomes]
rs12874982	0.81[EUR][1000 genomes]
rs12875395	0.84[EUR][1000 genomes]
rs12876057	0.80[EUR][1000 genomes]
rs12877660	0.80[EUR][1000 genomes]
rs16948775	0.81[EUR][1000 genomes]
rs16948800	0.80[EUR][1000 genomes]
rs16948803	0.80[EUR][1000 genomes]
rs16952683	0.81[EUR][1000 genomes]
rs17188977	0.81[EUR][1000 genomes]
rs17267683	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs17267711	0.81[EUR][1000 genomes]
rs17267738	0.80[EUR][1000 genomes]
rs17267745	0.80[EUR][1000 genomes]
rs1886205	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2762088	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2762091	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2762098	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2762108	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2762112	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2892657	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34119608	0.81[EUR][1000 genomes]
rs34136695	0.80[EUR][1000 genomes]
rs4644730	0.82[EUR][1000 genomes]
rs56228951	0.80[EUR][1000 genomes]
rs61964173	0.81[EUR][1000 genomes]
rs61964175	0.80[EUR][1000 genomes]
rs7317246	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7325511	0.80[EUR][1000 genomes]
rs7325937	0.80[EUR][1000 genomes]
rs7329962	0.81[EUR][1000 genomes]
rs7331613	0.80[EUR][1000 genomes]
rs7338634	0.80[EUR][1000 genomes]
rs73552665	0.80[EUR][1000 genomes]
rs74108531	0.80[EUR][1000 genomes]
rs7994743	0.80[EUR][1000 genomes]
rs7998675	0.80[EUR][1000 genomes]
rs7998856	0.80[EUR][1000 genomes]
rs7999019	0.80[EUR][1000 genomes]
rs7999482	0.80[EUR][1000 genomes]
rs8000632	0.80[EUR][1000 genomes]
rs8000987	0.80[EUR][1000 genomes]
rs920954	0.80[EUR][1000 genomes]
rs920955	0.80[EUR][1000 genomes]
rs9524047	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2762115	GPC6	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94041400-94047000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94046600-94052400	Weak transcription	Fetal Brain Male	brain

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