Variant report

Variant	rs2764156
Chromosome Location	chr6:4957263-4957264
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4944508..4946496-chr6:4954900..4957778,2	K562	blood:
2	chr6:4950081..4953438-chr6:4957036..4959775,3	MCF-7	breast:
3	chr6:4957030..4958687-chr6:4966178..4969021,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11967778	1.00[JPT][hapmap]
rs11967814	1.00[JPT][hapmap]
rs17139235	1.00[JPT][hapmap]
rs2764150	1.00[JPT][hapmap]
rs2764160	0.96[ASN][1000 genomes]
rs2764189	1.00[JPT][hapmap]
rs2793239	1.00[JPT][hapmap]
rs2793257	1.00[JPT][hapmap]
rs2985678	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6597100	0.96[ASN][1000 genomes]
rs6597101	0.96[ASN][1000 genomes]
rs6597102	0.96[ASN][1000 genomes]
rs795816	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs811259	1.00[JPT][hapmap]
rs877229	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1033905	chr6:4955826-5080904	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4943400-4957800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:4943600-4959600	Weak transcription	NHDF-Ad	bronchial
3	chr6:4943600-4970000	Weak transcription	Psoas Muscle	Psoas
4	chr6:4944000-4957400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:4946200-4970800	Weak transcription	Fetal Brain Female	brain
6	chr6:4947600-4970600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:4949200-4965200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:4949600-4960800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:4949800-4960000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:4953000-4958600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:4954200-4958400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:4954400-4957400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:4954400-4957400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:4954400-4957600	Weak transcription	Aorta	Aorta
15	chr6:4954400-4957800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:4954400-4957800	Weak transcription	Colonic Mucosa	Colon
17	chr6:4954400-4958000	Weak transcription	K562	blood
18	chr6:4954400-4958200	Weak transcription	Thymus	Thymus
19	chr6:4954400-4958200	Weak transcription	Spleen	Spleen
20	chr6:4954400-4958400	Weak transcription	Fetal Brain Male	brain
21	chr6:4954400-4959600	Weak transcription	Fetal Intestine Large	intestine
22	chr6:4954400-4961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:4954400-4967200	Weak transcription	Gastric	stomach
24	chr6:4954600-4957400	Weak transcription	Lung	lung
25	chr6:4954600-4958400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:4954600-4961000	Weak transcription	HepG2	liver
27	chr6:4954600-4961800	Weak transcription	NHLF	lung
28	chr6:4954600-4964600	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:4954800-4957800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:4954800-4958000	Weak transcription	Right Ventricle	heart
31	chr6:4954800-4958000	Weak transcription	NHEK	skin
32	chr6:4954800-4958200	Weak transcription	HMEC	breast
33	chr6:4954800-4958400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:4954800-4959000	Weak transcription	HSMM	muscle
35	chr6:4954800-4965200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:4954800-4973800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:4955000-4957600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:4955000-4957800	Weak transcription	Fetal Thymus	thymus
39	chr6:4955000-4957800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:4955000-4957800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:4955000-4957800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:4955000-4958200	Weak transcription	Brain Hippocampus Middle	brain
43	chr6:4955000-4965800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:4955600-4957800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:4955600-4958800	Weak transcription	Duodenum Mucosa	Duodenum
46	chr6:4955800-4957400	Weak transcription	Liver	Liver
47	chr6:4956000-4957600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:4956200-4958000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:4956400-4958000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr6:4956400-4958000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links