Variant report

Variant	rs2764677
Chromosome Location	chr1:58526257-58526258
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11806667	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv527673	chr1:58526235-58531627	Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58524600-58526800	Enhancers	Fetal Brain Male	brain
2	chr1:58525200-58526600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:58525200-58526800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:58525400-58526400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:58525400-58526800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:58525600-58526600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:58525600-58526800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:58525800-58526600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:58525800-58529800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr1:58525800-58531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:58526000-58526600	Weak transcription	Fetal Brain Female	brain
12	chr1:58526000-58530000	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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