Variant report

Variant	rs2765251
Chromosome Location	chr1:62745206-62745207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10493320	0.84[AMR][1000 genomes]
rs12063531	0.84[AMR][1000 genomes]
rs12065844	0.82[AMR][1000 genomes]
rs12078087	0.84[AMR][1000 genomes]
rs12079207	0.84[AMR][1000 genomes]
rs12718429	0.84[AMR][1000 genomes]
rs12760226	0.82[AMR][1000 genomes]
rs12760895	0.80[AMR][1000 genomes]
rs2260581	0.86[JPT][hapmap]
rs2262110	0.86[JPT][hapmap]
rs2296518	0.80[AMR][1000 genomes]
rs2666472	0.86[JPT][hapmap]
rs2666487	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2666488	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2666503	0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2666506	1.00[CHB][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2666507	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2666508	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2765241	0.86[JPT][hapmap]
rs2765248	0.86[JPT][hapmap]
rs2765258	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34752481	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7516290	0.89[CEU][hapmap];0.91[CHB][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs912894	0.84[AMR][1000 genomes]
rs912895	0.84[AMR][1000 genomes]
rs912896	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1009398	chr1:62656660-62780644	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62732400-62748400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:62734200-62750800	Weak transcription	Gastric	stomach
3	chr1:62738000-62749000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:62738200-62746400	Weak transcription	Fetal Kidney	kidney
5	chr1:62738200-62751200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:62740200-62746400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:62740400-62745400	Weak transcription	Fetal Lung	lung
8	chr1:62740400-62746600	Weak transcription	Pancreas	Pancrea
9	chr1:62743200-62746800	Weak transcription	HMEC	breast
10	chr1:62743200-62747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:62743400-62746200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:62743400-62746600	Weak transcription	Fetal Intestine Small	intestine
13	chr1:62744000-62746400	Weak transcription	Liver	Liver
14	chr1:62744400-62745400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:62744400-62745600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr1:62744400-62746200	Enhancers	Fetal Muscle Leg	muscle
17	chr1:62744400-62746400	Enhancers	Fetal Heart	heart
18	chr1:62744600-62745400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
19	chr1:62744600-62745400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:62744600-62745400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr1:62744600-62745400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr1:62744600-62745600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr1:62744600-62745600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:62744600-62745800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:62744600-62745800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:62744600-62745800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr1:62744600-62746000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:62744600-62746200	Enhancers	Fetal Muscle Trunk	muscle
29	chr1:62744600-62746200	Enhancers	Placenta	Placenta
30	chr1:62744800-62745400	Weak transcription	Fetal Thymus	thymus
31	chr1:62744800-62746200	Enhancers	Adipose Nuclei	Adipose
32	chr1:62744800-62746400	Enhancers	Fetal Stomach	stomach
33	chr1:62744800-62747600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr1:62744800-62750800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:62745000-62746400	Enhancers	HSMMtube	muscle
36	chr1:62745000-62747000	Strong transcription	HepG2	liver
37	chr1:62745200-62745400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
38	chr1:62745200-62745400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
39	chr1:62745200-62745600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
40	chr1:62745200-62745800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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