Variant report

Variant	rs2767381
Chromosome Location	chr14:68645776-68645777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68602556..68605498-chr14:68644856..68647677,2	MCF-7	breast:
2	chr14:68635724..68652229-chr14:68652309..68662207,28	MCF-7	breast:
3	chr14:68407559..68409151-chr14:68644615..68646770,2	MCF-7	breast:
4	chr14:68407881..68410251-chr14:68645249..68646841,2	MCF-7	breast:
5	chr14:68644184..68646511-chr14:68924637..68927356,2	MCF-7	breast:
6	chr14:68645595..68647728-chr14:69282416..69284911,2	MCF-7	breast:
7	chr14:68644898..68647865-chr14:68656989..68659986,2	K562	blood:
8	chr14:68604553..68606506-chr14:68645240..68647824,2	MCF-7	breast:
9	chr14:68641980..68649731-chr14:69257226..69262968,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2588822	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767361	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767362	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767363	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767380	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2767386	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34030120	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1048794	chr14:68614152-68649231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68635400-68648200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:68636200-68648000	Weak transcription	HSMM	muscle
3	chr14:68638800-68645800	Enhancers	Colon Smooth Muscle	Colon
4	chr14:68640400-68647600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:68640400-68648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:68640600-68648200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr14:68641000-68648200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:68641000-68648200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:68641200-68647600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:68641400-68647400	Weak transcription	HepG2	liver
11	chr14:68641400-68648400	Weak transcription	Liver	Liver
12	chr14:68641400-68658000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:68642200-68647400	Weak transcription	Fetal Intestine Large	intestine
14	chr14:68642400-68659800	Weak transcription	Pancreas	Pancrea
15	chr14:68643400-68646000	Enhancers	A549	lung
16	chr14:68643600-68646000	Enhancers	Fetal Heart	heart
17	chr14:68643800-68645800	Enhancers	Fetal Lung	lung
18	chr14:68644400-68646000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:68644400-68646600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:68644600-68645800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:68644600-68646000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:68644600-68646000	Enhancers	Fetal Kidney	kidney
23	chr14:68644600-68646000	Enhancers	Stomach Mucosa	stomach
24	chr14:68644600-68646000	Enhancers	Osteobl	bone
25	chr14:68644600-68646200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr14:68644600-68646200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:68644600-68646200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr14:68644600-68646600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr14:68644600-68646600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr14:68644600-68646600	Enhancers	Duodenum Mucosa	Duodenum
31	chr14:68644800-68646000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:68644800-68648000	Weak transcription	Small Intestine	intestine
33	chr14:68644800-68648400	Weak transcription	Esophagus	oesophagus
34	chr14:68644800-68648400	Weak transcription	Ovary	ovary
35	chr14:68645000-68651000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr14:68645000-68655600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:68645200-68646000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr14:68645200-68646000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:68645200-68646200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr14:68645200-68646400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr14:68645200-68647000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr14:68645400-68646000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr14:68645400-68646000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:68645400-68646000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr14:68645400-68646600	Weak transcription	Fetal Stomach	stomach
46	chr14:68645400-68647800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:68645400-68647800	Weak transcription	NHDF-Ad	bronchial
48	chr14:68645400-68648000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr14:68645600-68646000	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr14:68645600-68646000	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links