Variant report

Variant	rs2772195
Chromosome Location	chrX:138822956-138822957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:138818456..138819998-chrX:138822453..138824439,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2094702	0.83[YRI][hapmap]
rs2497267	0.81[YRI][hapmap]
rs2772186	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532936	chrX:138687855-139384681	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv491760	chrX:138780768-139283477	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
3	nsv7116	chrX:138815720-138851105	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:138802200-138836600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chrX:138804800-138832000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chrX:138805200-138829200	Weak transcription	Duodenum Mucosa	Duodenum
4	chrX:138805400-138835200	Weak transcription	Primary hematopoietic stem cells	blood
5	chrX:138806600-138836400	Weak transcription	Dnd41	blood
6	chrX:138806800-138866800	Weak transcription	Left Ventricle	heart
7	chrX:138807200-138858200	Weak transcription	Primary B cells from cord blood	blood
8	chrX:138807600-138831200	Weak transcription	Fetal Muscle Trunk	muscle
9	chrX:138807800-138825400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chrX:138807800-138832400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chrX:138808200-138835600	Weak transcription	Fetal Stomach	stomach
12	chrX:138808400-138832600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chrX:138809000-138836000	Weak transcription	Adipose Nuclei	Adipose
14	chrX:138810000-138827200	Weak transcription	Stomach Smooth Muscle	stomach
15	chrX:138810000-138835000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chrX:138810600-138840400	Weak transcription	K562	blood
17	chrX:138811200-138834800	Weak transcription	Spleen	Spleen
18	chrX:138812200-138832200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chrX:138812800-138826000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chrX:138812800-138831200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chrX:138812800-138835600	Weak transcription	Fetal Thymus	thymus
22	chrX:138813600-138833400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chrX:138814000-138883600	Weak transcription	Gastric	stomach
24	chrX:138814200-138848400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chrX:138814600-138827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chrX:138815200-138827200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chrX:138815200-138849000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chrX:138815400-138829200	Weak transcription	HepG2	liver
29	chrX:138815800-138854200	Weak transcription	Thymus	Thymus
30	chrX:138816200-138823200	Strong transcription	Liver	Liver
31	chrX:138816400-138823800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chrX:138816800-138835800	Weak transcription	Brain Germinal Matrix	brain
33	chrX:138817400-138832000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chrX:138818200-138836600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chrX:138818400-138823000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chrX:138818600-138830600	Weak transcription	Psoas Muscle	Psoas
37	chrX:138818600-138857600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chrX:138819200-138834000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chrX:138819400-138834800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chrX:138819800-138832200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chrX:138819800-138848400	Weak transcription	Fetal Intestine Large	intestine
42	chrX:138820200-138832800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chrX:138821000-138823600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chrX:138821000-138829400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chrX:138821000-138854600	Weak transcription	Ovary	ovary
46	chrX:138821200-138826000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chrX:138821200-138826600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chrX:138821400-138823200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chrX:138821400-138827000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chrX:138821400-138829400	Weak transcription	HMEC	breast

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