Variant report

Variant	rs2772690
Chromosome Location	chr9:17947742-17947743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1618634	0.91[EUR][1000 genomes]
rs1755287	0.91[EUR][1000 genomes]
rs1778181	0.91[EUR][1000 genomes]
rs2383057	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2772688	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2772692	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2811805	0.91[EUR][1000 genomes]
rs2811820	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811821	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811823	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2811824	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2811825	0.88[AFR][1000 genomes]
rs2840779	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2840781	0.90[AFR][1000 genomes]
rs2840782	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35493990	0.91[EUR][1000 genomes]
rs4381045	0.91[EUR][1000 genomes]
rs4486301	0.91[EUR][1000 genomes]
rs4504738	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4961612	0.91[EUR][1000 genomes]
rs7024652	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7847249	0.91[EUR][1000 genomes]
rs7847635	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9406730	1.00[CEU][hapmap]
rs9406731	1.00[CEU][hapmap]
rs9406737	1.00[CEU][hapmap]
rs9407877	1.00[CEU][hapmap]
rs9407878	1.00[CEU][hapmap]
rs9407879	1.00[CEU][hapmap]
rs9407880	1.00[CEU][hapmap]
rs9407881	1.00[CEU][hapmap]
rs9407882	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1795741	chr9:17880109-17951331	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv1797946	chr9:17880109-17951331	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv1818676	chr9:17880109-17951331	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv1829631	chr9:17880109-17951331	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv1830694	chr9:17880109-17951331	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv1834674	chr9:17880109-17951331	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
10	esv1836647	chr9:17880109-17951331	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv1845722	chr9:17880109-17951331	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	esv1849548	chr9:17880109-17951331	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv892676	chr9:17911466-17987408	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv892677	chr9:17918806-18002205	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv1020855	chr9:17929044-17975791	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17940200-17962200	Weak transcription	Aorta	Aorta
2	chr9:17947600-17947800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr9:17947600-17949400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links