Variant report

Variant	rs2774166
Chromosome Location	chr14:36638655-36638656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1169134	0.87[EUR][1000 genomes]
rs1169135	0.87[EUR][1000 genomes]
rs1169136	0.87[EUR][1000 genomes]
rs1169137	0.87[EUR][1000 genomes]
rs1169139	0.90[ASN][1000 genomes]
rs1169140	0.88[EUR][1000 genomes]
rs1169142	0.85[EUR][1000 genomes]
rs1169144	0.88[EUR][1000 genomes]
rs1169145	0.96[EUR][1000 genomes]
rs1169146	0.86[ASN][1000 genomes]
rs1169147	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1169148	0.81[ASN][1000 genomes]
rs1169149	0.82[ASN][1000 genomes]
rs1169150	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1169151	0.98[ASN][1000 genomes]
rs1182929	0.97[ASN][1000 genomes]
rs1183904	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1305576	0.88[EUR][1000 genomes]
rs1619784	0.96[CEU][hapmap];0.81[ASN][1000 genomes]
rs1820604	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834854	0.83[ASN][1000 genomes]
rs1834855	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1952707	0.87[TSI][hapmap]
rs2415319	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415320	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34992253	0.99[ASN][1000 genomes]
rs7147401	0.80[JPT][hapmap]
rs934075	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs944289	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1041441	chr14:36545463-36756347	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv542041	chr14:36545463-36756347	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36629600-36646000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:36637400-36638800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:36637400-36638800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:36637400-36638800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:36638200-36654200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:36638600-36639200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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