Variant report

Variant	rs2774247
Chromosome Location	chr9:93682202-93682203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93681178..93683556-chr9:93684318..93687198,2	MCF-7	breast:
2	chr9:93682025..93684983-chr9:93787806..93789762,2	MCF-7	breast:
3	chr9:93677665..93682323-chr9:93683536..93687193,5	MCF-7	breast:
4	chr9:93677459..93679335-chr9:93682010..93683558,2	MCF-7	breast:
5	chr9:93680322..93682785-chr9:93726933..93729227,2	MCF-7	breast:
6	chr9:93675751..93682846-chr9:94184185..94190004,10	MCF-7	breast:
7	chr9:93681274..93683060-chr9:93714729..93717613,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction
ENSG00000165030	Chromatin interaction
ENSG00000228216	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1755981	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs192650	0.82[AMR][1000 genomes]
rs291753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs296721	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv3437897	chr9:93680731-93685229	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93658800-93683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:93677800-93682400	Weak transcription	HMEC	breast
3	chr9:93678600-93683200	Weak transcription	Liver	Liver
4	chr9:93681400-93682400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:93681400-93683400	Enhancers	Aorta	Aorta
6	chr9:93681400-93686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:93681400-93687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:93681600-93683000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:93681600-93683800	Enhancers	Right Atrium	heart
10	chr9:93681600-93684000	Enhancers	Esophagus	oesophagus
11	chr9:93681800-93683000	Enhancers	Right Ventricle	heart
12	chr9:93682000-93682600	Enhancers	Fetal Muscle Trunk	muscle
13	chr9:93682000-93682600	Enhancers	Fetal Muscle Leg	muscle
14	chr9:93682200-93682400	Weak transcription	Pancreas	Pancrea
15	chr9:93682200-93682600	Enhancers	Left Ventricle	heart
16	chr9:93682200-93682800	Enhancers	Fetal Brain Male	brain
17	chr9:93682200-93682800	Enhancers	Fetal Heart	heart
18	chr9:93682200-93683400	Enhancers	Brain Germinal Matrix	brain
19	chr9:93682200-93684000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:93682200-93684000	Enhancers	Fetal Stomach	stomach
21	chr9:93682200-93684200	Enhancers	Adipose Nuclei	Adipose

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