Variant report

Variant	rs2774249
Chromosome Location	chr9:93686823-93686824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93681178..93683556-chr9:93684318..93687198,2	MCF-7	breast:
2	chr9:93679019..93680956-chr9:93684152..93687149,2	K562	blood:
3	chr9:93676720..93679314-chr9:93684985..93688336,3	MCF-7	breast:
4	chr9:93677665..93682323-chr9:93683536..93687193,5	MCF-7	breast:
5	chr9:93685464..93688726-chr9:93695370..93697391,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10123208	0.85[EUR][1000 genomes]
rs169744	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2613303	0.81[AMR][1000 genomes]
rs291750	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291751	0.85[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs291756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs291760	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34399280	0.85[EUR][1000 genomes]
rs35719753	0.81[EUR][1000 genomes]
rs7850816	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93681400-93687200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr9:93683000-93692000	Weak transcription	Right Ventricle	heart
3	chr9:93683800-93687000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:93684000-93687400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:93684000-93687600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:93684000-93688400	Weak transcription	Aorta	Aorta
7	chr9:93684200-93687800	Weak transcription	Adipose Nuclei	Adipose
8	chr9:93684600-93687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:93685600-93687000	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:93685600-93689200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:93686000-93687000	Enhancers	Primary B cells from cord blood	blood
12	chr9:93686000-93690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:93686200-93687000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:93686200-93687400	Enhancers	GM12878-XiMat	blood
15	chr9:93686200-93689600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr9:93686400-93687000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:93686400-93688400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:93686600-93687000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:93686600-93687600	Weak transcription	NHEK	skin
20	chr9:93686600-93687800	Weak transcription	HMEC	breast
21	chr9:93686800-93688000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:93686800-93690200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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