Variant report

Variant	rs2774290
Chromosome Location	chr1:114631393-114631394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:114623682..114625448-chr1:114629138..114631604,2	K562	blood:
2	chr1:114621187..114625954-chr1:114630932..114635442,7	MCF-7	breast:
3	chr1:114594344..114596530-chr1:114631234..114632774,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1574509	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2432	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv1849780	chr1:114577463-114663164	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114619200-114640200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:114625400-114631800	Weak transcription	Brain Germinal Matrix	brain
3	chr1:114625400-114639600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:114625400-114639800	Weak transcription	Right Atrium	heart
5	chr1:114625600-114631600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:114626400-114631600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:114630000-114632600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:114630400-114631600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:114630400-114675800	Weak transcription	Pancreas	Pancrea
10	chr1:114630600-114632800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:114630800-114631400	Genic enhancers	Fetal Lung	lung
12	chr1:114630800-114631400	Bivalent Enhancer	K562	blood
13	chr1:114630800-114632200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:114630800-114632400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:114630800-114632400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:114630800-114632600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:114630800-114632600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr1:114630800-114632800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:114631000-114631400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:114631000-114631600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:114631000-114632400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr1:114631000-114632400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr1:114631000-114632400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:114631000-114632400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr1:114631000-114632800	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:114631000-114633400	Enhancers	HMEC	breast
27	chr1:114631200-114631400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:114631200-114631400	Enhancers	Fetal Brain Female	brain
29	chr1:114631200-114631400	Bivalent Enhancer	Placenta	Placenta
30	chr1:114631200-114631800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr1:114631200-114631800	Enhancers	Fetal Muscle Leg	muscle
32	chr1:114631200-114632800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr1:114631200-114633400	Enhancers	NHEK	skin

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