Variant report

Variant	rs2774620
Chromosome Location	chr9:17135621-17135622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2774621	0.82[YRI][hapmap]
rs2774625	1.00[YRI][hapmap]
rs2815178	1.00[YRI][hapmap]
rs398527	0.85[YRI][hapmap]
rs966406	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17134200-17136400	Active TSS	Fetal Brain Female	brain
2	chr9:17134400-17135800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:17134400-17136000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr9:17134400-17136000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:17134400-17136000	Active TSS	Brain Hippocampus Middle	brain
6	chr9:17134400-17136000	Active TSS	Brain Substantia Nigra	brain
7	chr9:17134400-17136200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:17134400-17136200	Active TSS	Brain Anterior Caudate	brain
9	chr9:17134400-17136400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:17134400-17136400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:17134600-17135800	Flanking Active TSS	Colonic Mucosa	Colon
12	chr9:17134600-17136000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:17134600-17136000	Active TSS	Pancreas	Pancrea
14	chr9:17134600-17136000	Active TSS	Psoas Muscle	Psoas
15	chr9:17134600-17136200	Active TSS	H9 Cell Line	embryonic stem cell
16	chr9:17134600-17136200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:17134600-17136200	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr9:17134600-17136200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:17134600-17136200	Active TSS	Aorta	Aorta
20	chr9:17134600-17136200	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr9:17134600-17136200	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr9:17134600-17136200	Active TSS	Right Atrium	heart
23	chr9:17134600-17136200	Active TSS	HSMM	muscle
24	chr9:17134600-17136200	Active TSS	HSMMtube	muscle
25	chr9:17134600-17136400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:17134600-17136400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:17134600-17136400	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr9:17134800-17135800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:17134800-17135800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:17134800-17135800	Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr9:17134800-17135800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr9:17134800-17135800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:17134800-17135800	Active TSS	Liver	Liver
34	chr9:17134800-17135800	Active TSS	Brain Cingulate Gyrus	brain
35	chr9:17134800-17135800	Active TSS	Fetal Heart	heart
36	chr9:17134800-17135800	Active TSS	Placenta Amnion	Placenta Amnion
37	chr9:17134800-17135800	Active TSS	Stomach Mucosa	stomach
38	chr9:17134800-17135800	Active TSS	NH-A	brain
39	chr9:17134800-17136000	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr9:17134800-17136000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:17134800-17136000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr9:17134800-17136000	Active TSS	Fetal Intestine Large	intestine
43	chr9:17134800-17136000	Active TSS	Left Ventricle	heart
44	chr9:17134800-17136000	Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr9:17134800-17136000	Active TSS	Hela-S3	cervix
46	chr9:17134800-17136000	Active TSS	HepG2	liver
47	chr9:17134800-17136200	Active TSS	Primary B cells from cord blood	blood
48	chr9:17134800-17136200	Active TSS	Primary T cells from cord blood	blood
49	chr9:17134800-17136200	Active TSS	Brain Angular Gyrus	brain
50	chr9:17134800-17136200	Active TSS	Brain Inferior Temporal Lobe	brain

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