Variant report

Variant	rs2774636
Chromosome Location	chr9:116420200-116420201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116208070..116209251-chr9:116419965..116420855,5	MCF-7	breast:
2	chr9:116410830..116412902-chr9:116418886..116421304,2	MCF-7	breast:
3	chr9:116419179..116421733-chr9:116422325..116423904,2	MCF-7	breast:
4	chr9:116353664..116354880-chr9:116419965..116420903,13	MCF-7	breast:
5	chr9:116171892..116172716-chr9:116419991..116420576,3	MCF-7	breast:
6	chr9:116419937..116420664-chr9:116444300..116444924,2	MCF-7	breast:
7	chr9:116163598..116164314-chr9:116419979..116420889,5	MCF-7	breast:
8	chr9:116170697..116173619-chr9:116417957..116421147,3	MCF-7	breast:
9	chr9:116352358..116352865-chr9:116419481..116420213,2	MCF-7	breast:
10	chr9:116036423..116037332-chr9:116419975..116420491,2	K562	blood:
11	chr9:116173018..116174761-chr9:116419577..116421827,2	MCF-7	breast:
12	chr9:116198894..116199696-chr9:116419927..116420485,2	K562	blood:
13	chr9:116420136..116422934-chr9:116424938..116428259,3	K562	blood:
14	chr9:116331552..116333481-chr9:116417834..116420426,2	K562	blood:
15	chr9:116419739..116422322-chr9:116424476..116427451,2	K562	blood:
16	chr9:116352994..116354643-chr9:116419596..116420916,16	K562	blood:
17	chr9:116409796..116412169-chr9:116418517..116420512,2	MCF-7	breast:
18	chr9:116208196..116208729-chr9:116419915..116420419,2	K562	blood:
19	chr9:116348055..116356711-chr9:116416824..116421069,13	MCF-7	breast:
20	chr9:116163315..116164239-chr9:116419910..116420704,3	K562	blood:
21	chr9:116353834..116354605-chr9:116419925..116420881,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148229	Chromatin interaction
ENSG00000148218	Chromatin interaction
ENSG00000138835	Chromatin interaction
ENSG00000237073	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs609925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544672	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv466512	chr9:116413751-116446881	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv615220	chr9:116413751-116446881	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3326886	chr9:116417931-116422229	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116414000-116420600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:116415400-116420200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:116415800-116421000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116416200-116422200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:116416600-116420800	Enhancers	Spleen	Spleen
6	chr9:116417600-116420600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:116417800-116420200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:116417800-116420200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:116417800-116420200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:116417800-116420200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:116417800-116420200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:116417800-116420200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:116417800-116420200	Weak transcription	HMEC	breast
14	chr9:116417800-116420200	Weak transcription	NH-A	brain
15	chr9:116417800-116420200	Weak transcription	Osteobl	bone
16	chr9:116417800-116420400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr9:116417800-116420400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:116417800-116420600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:116417800-116420600	Weak transcription	A549	lung
20	chr9:116417800-116420800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr9:116417800-116421200	Enhancers	HUVEC	blood vessel
22	chr9:116418000-116420200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:116418800-116420600	Enhancers	Fetal Stomach	stomach
24	chr9:116418800-116421000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:116418800-116421200	Enhancers	Placenta	Placenta
26	chr9:116418800-116421800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:116419000-116421000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr9:116419400-116420400	Enhancers	Liver	Liver
29	chr9:116419400-116420400	Enhancers	GM12878-XiMat	blood
30	chr9:116419400-116420400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr9:116419400-116420600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr9:116419400-116420800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:116419400-116420800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr9:116419400-116421000	Enhancers	Fetal Heart	heart
35	chr9:116419400-116421600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr9:116419400-116421800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:116419600-116420200	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:116419600-116420200	Enhancers	Psoas Muscle	Psoas
39	chr9:116419600-116420400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:116419600-116420400	Enhancers	Fetal Muscle Trunk	muscle
41	chr9:116419600-116420400	Enhancers	Left Ventricle	heart
42	chr9:116419600-116420800	Enhancers	Right Ventricle	heart
43	chr9:116419600-116421000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:116419600-116421000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:116419800-116420200	Flanking Active TSS	Fetal Lung	lung
46	chr9:116419800-116420400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:116419800-116420400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr9:116419800-116420400	Enhancers	Brain Anterior Caudate	brain
49	chr9:116419800-116420400	Enhancers	Fetal Kidney	kidney
50	chr9:116419800-116420800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links