Variant report

Variant	rs2776797
Chromosome Location	chr6:37173085-37173086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
2	chr6:37156818..37161104-chr6:37172850..37175996,3	K562	blood:
3	chr6:36990423..36992455-chr6:37172095..37173787,2	K562	blood:
4	chr6:36987477..36989707-chr6:37172018..37174829,3	K562	blood:
5	chr6:37135932..37139424-chr6:37171946..37173659,3	MCF-7	breast:
6	chr6:36994882..36997738-chr6:37171997..37173626,2	K562	blood:
7	chr6:37155352..37158318-chr6:37172850..37175746,2	K562	blood:
8	chr6:36990365..36993008-chr6:37173056..37174910,2	MCF-7	breast:
9	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
10	chr6:37022772..37024698-chr6:37171655..37174506,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1150790	0.92[CHD][hapmap]
rs1224329	0.92[CHD][hapmap]
rs262944	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs262948	0.92[EUR][1000 genomes]
rs9462285	0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2776797	RNF8	cis	cerebellum	SCAN
rs2776797	RNF8	cis	parietal	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37167400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:37167600-37173600	Enhancers	Fetal Intestine Small	intestine
4	chr6:37168000-37173800	Enhancers	HepG2	liver
5	chr6:37169200-37174000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:37169400-37173200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:37169400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:37169400-37173400	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:37169400-37174200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:37169400-37174200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:37169600-37176200	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:37169800-37173800	Enhancers	Fetal Intestine Large	intestine
13	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:37170600-37173600	Enhancers	Hela-S3	cervix
15	chr6:37170800-37178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:37171000-37173600	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr6:37171000-37175400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:37171000-37175600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:37171000-37177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:37171200-37175200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:37171600-37173200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:37171600-37175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:37171800-37173400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:37171800-37173600	Enhancers	A549	lung
25	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
26	chr6:37172200-37173200	Enhancers	K562	blood
27	chr6:37172200-37173400	Weak transcription	Primary T cells from cord blood	blood
28	chr6:37172200-37173400	Enhancers	GM12878-XiMat	blood
29	chr6:37172200-37173800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:37172400-37177800	Weak transcription	Fetal Heart	heart
31	chr6:37172400-37177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:37172800-37173200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:37172800-37173600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:37172800-37174000	Flanking Active TSS	Dnd41	blood
35	chr6:37173000-37173200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:37173000-37173200	Enhancers	Colonic Mucosa	Colon
37	chr6:37173000-37173400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:37173000-37173400	Enhancers	Small Intestine	intestine
39	chr6:37173000-37173600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:37173000-37173600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:37173000-37173600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:37173000-37173600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr6:37173000-37174200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:37173000-37175600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:37173000-37178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood

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