Variant report

Variant	rs2777337
Chromosome Location	chr9:104164487-104164488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104159627..104161244-chr9:104162690..104167076,3	K562	blood:
2	chr9:104163070..104164765-chr9:104190213..104192227,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136897	Chromatin interaction
ENSG00000136872	Chromatin interaction
ENSG00000136870	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1233983	0.83[EUR][1000 genomes]
rs2777336	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2777338	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2777348	0.85[EUR][1000 genomes]
rs4577	0.86[EUR][1000 genomes]
rs475348	0.86[EUR][1000 genomes]
rs491979	0.87[EUR][1000 genomes]
rs506571	0.85[EUR][1000 genomes]
rs525998	0.86[EUR][1000 genomes]
rs577823	0.86[EUR][1000 genomes]
rs578597	0.86[EUR][1000 genomes]
rs7852444	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2777337	ALDOB	cis	Artery Tibial	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104162000-104164600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:104162000-104169600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:104162200-104165200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:104162400-104164800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:104162400-104165000	Transcr. at gene 5' and 3'	HepG2	liver
6	chr9:104162400-104165200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
7	chr9:104162400-104165400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr9:104162400-104166000	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:104162400-104167400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:104162600-104164600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:104162600-104165400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:104162600-104166200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:104162600-104166200	Transcr. at gene 5' and 3'	Brain Anterior Caudate	brain
14	chr9:104162600-104170400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:104162600-104170400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:104162600-104171600	Strong transcription	Placenta	Placenta
17	chr9:104162600-104172000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:104162800-104164600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:104162800-104164600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:104162800-104164600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr9:104162800-104165000	Weak transcription	Colonic Mucosa	Colon
22	chr9:104162800-104165400	Weak transcription	Gastric	stomach
23	chr9:104162800-104165400	Strong transcription	HSMM	muscle
24	chr9:104162800-104165400	Strong transcription	NHDF-Ad	bronchial
25	chr9:104162800-104165800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
26	chr9:104162800-104167000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:104162800-104167000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr9:104162800-104167400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:104162800-104168000	Weak transcription	Esophagus	oesophagus
30	chr9:104162800-104169000	Strong transcription	HSMMtube	muscle
31	chr9:104162800-104169200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:104162800-104169400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr9:104162800-104169600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr9:104162800-104170000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:104162800-104170000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:104162800-104172200	ZNF genes & repeats	A549	lung
37	chr9:104162800-104173800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:104163000-104165200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr9:104163000-104165400	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr9:104163000-104165400	Strong transcription	Rectal Smooth Muscle	rectum
41	chr9:104163000-104165400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr9:104163000-104165400	Strong transcription	NHEK	skin
43	chr9:104163000-104167000	Strong transcription	Osteobl	bone
44	chr9:104163000-104167200	Strong transcription	NHLF	lung
45	chr9:104163000-104167400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:104163000-104168000	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr9:104163000-104169600	Strong transcription	Fetal Thymus	thymus
48	chr9:104163000-104169800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:104163000-104173000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr9:104163200-104164800	Strong transcription	Fetal Muscle Leg	muscle

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