Variant report

Variant	rs2777741
Chromosome Location	chr9:33492319-33492320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:33464987..33466582-chr9:33491183..33494064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165271	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10758210	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10813989	0.90[ASN][1000 genomes]
rs10813990	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10971538	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10971541	0.85[ASN][1000 genomes]
rs10971543	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10971544	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11787590	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12002293	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2777740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2777742	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2777744	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2777753	0.84[CEU][hapmap]
rs2785205	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2785206	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2989934	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2989935	0.92[ASN][1000 genomes]
rs2989938	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2992817	0.84[CEU][hapmap]
rs2992822	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2992823	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2992824	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2992825	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2992826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2992827	1.00[ASN][1000 genomes]
rs2992828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2992829	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs521769	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61294221	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6476412	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7019561	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7023317	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7032025	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7032925	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7033908	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7047660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73482878	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9696671	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024207	chr9:33296368-33574892	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv972306	chr9:33486353-33510883	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv14718	chr9:33488744-33492628	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:33474800-33496000	Weak transcription	HUVEC	blood vessel
2	chr9:33474800-33498200	Weak transcription	HSMMtube	muscle
3	chr9:33475000-33492400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:33475000-33494400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:33475000-33510400	Weak transcription	Fetal Lung	lung
6	chr9:33475000-33510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:33477000-33496000	Weak transcription	Brain Angular Gyrus	brain
8	chr9:33478800-33510600	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:33489600-33494000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:33489800-33493800	Weak transcription	A549	lung
11	chr9:33489800-33494000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:33489800-33496000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:33490600-33493800	Weak transcription	K562	blood

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