Variant report

Variant	rs277936
Chromosome Location	chr5:70936643-70936644
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:70929199..70932384-chr5:70932859..70936890,5	MCF-7	breast:
2	chr5:70926856..70929109-chr5:70934806..70937462,2	MCF-7	breast:
3	chr5:70926230..70927749-chr5:70936129..70937850,2	K562	blood:
4	chr5:70930390..70934601-chr5:70935196..70939070,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs157049	0.85[EUR][1000 genomes]
rs277938	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs277954	0.81[EUR][1000 genomes]
rs277976	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs277978	0.85[EUR][1000 genomes]
rs277979	0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs277980	0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs277981	0.85[EUR][1000 genomes]
rs277986	0.82[EUR][1000 genomes]
rs277996	0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs277999	0.85[EUR][1000 genomes]
rs278000	0.81[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs278001	0.85[EUR][1000 genomes]
rs456938	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs544779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830340	chr5:70797113-70967110	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv532805	chr5:70916228-71020967	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70895800-70937800	Weak transcription	Colonic Mucosa	Colon
2	chr5:70897800-70944800	Weak transcription	Small Intestine	intestine
3	chr5:70898200-70944200	Weak transcription	Osteobl	bone
4	chr5:70898400-70955000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:70898600-70948400	Weak transcription	Brain Germinal Matrix	brain
6	chr5:70900000-70944800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:70900200-70945200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:70906600-70952400	Weak transcription	Stomach Mucosa	stomach
9	chr5:70909000-70938200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:70912600-70941800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:70912600-70943800	Weak transcription	A549	lung
12	chr5:70914200-70938000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:70914200-70948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:70915400-70950800	Weak transcription	NHLF	lung
15	chr5:70917000-70945000	Weak transcription	Hela-S3	cervix
16	chr5:70917200-70937800	Weak transcription	Aorta	Aorta
17	chr5:70917200-70942000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:70917400-70942600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:70918000-70942400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:70919800-70955000	Weak transcription	HUVEC	blood vessel
21	chr5:70923200-70937600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:70925400-70950600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:70926600-70954000	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:70927000-70939600	Strong transcription	Fetal Intestine Large	intestine
25	chr5:70927000-70939800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:70927000-70954000	Strong transcription	Dnd41	blood
27	chr5:70927000-70954200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:70927200-70937800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:70927200-70940200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr5:70927400-70938200	Weak transcription	Spleen	Spleen
31	chr5:70927600-70940000	Strong transcription	Liver	Liver
32	chr5:70927600-70940200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr5:70928000-70940200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr5:70928000-70940200	Strong transcription	Adipose Nuclei	Adipose
35	chr5:70928000-70940200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr5:70928600-70943800	Weak transcription	Thymus	Thymus
37	chr5:70928800-70937800	Weak transcription	Pancreas	Pancrea
38	chr5:70928800-70938000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:70928800-70942800	Weak transcription	Fetal Thymus	thymus
40	chr5:70928800-70945800	Weak transcription	NHEK	skin
41	chr5:70929600-70940000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:70929800-70937200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr5:70930000-70939800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr5:70930200-70938800	Strong transcription	Left Ventricle	heart
45	chr5:70930200-70940400	Strong transcription	Primary B cells from cord blood	blood
46	chr5:70930400-70936800	Weak transcription	Placenta	Placenta
47	chr5:70930400-70938200	Weak transcription	Esophagus	oesophagus
48	chr5:70930400-70938800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:70930400-70952600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr5:70930600-70937800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links