Variant report
| Variant | rs2779519 |
|---|---|
| Chromosome Location | chr9:101323921-101323922 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:101321972..101324468-chr9:101326630..101329406,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1184859 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1759308 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2095121 | 0.84[ASN][1000 genomes] |
| rs2779575 | 0.84[ASN][1000 genomes] |
| rs2779577 | 0.84[ASN][1000 genomes] |
| rs2779579 | 0.84[ASN][1000 genomes] |
| rs2779580 | 0.84[ASN][1000 genomes] |
| rs2779583 | 0.84[ASN][1000 genomes] |
| rs2779586 | 0.84[ASN][1000 genomes] |
| rs2779589 | 0.84[ASN][1000 genomes] |
| rs2779590 | 0.82[ASN][1000 genomes] |
| rs2779591 | 0.84[ASN][1000 genomes] |
| rs2779593 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430085 | chr9:100928245-101339645 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv831665 | chr9:101170061-101367692 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv614936 | chr9:101182698-101680380 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv6633 | chr9:101308371-101342811 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:101314400-101326400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
