Variant report

Variant	rs2779550
Chromosome Location	chr9:101251676-101251677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101223608..101225770-chr9:101250679..101253529,2	K562	blood:
2	chr9:101241342..101242913-chr9:101250856..101252487,2	MCF-7	breast:
3	chr9:101248306..101252181-chr9:101254407..101256445,3	K562	blood:
4	chr9:101250556..101252952-chr9:101255727..101258630,2	MCF-7	breast:
5	chr9:101238884..101240715-chr9:101251024..101252922,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2151214	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2779520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2779532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2779544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2779546	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2779547	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2779548	0.90[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2779552	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2779556	0.85[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2779557	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2779563	1.00[TSI][hapmap]
rs2779592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2779593	1.00[TSI][hapmap]
rs2779595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2808542	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2808551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2808555	0.90[ASN][1000 genomes]
rs2808557	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2808558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs871797	0.85[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6630	chr9:101236324-101267349	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101247000-101263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101248400-101264200	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101248800-101264200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101250000-101251800	Enhancers	NHDF-Ad	bronchial
5	chr9:101250000-101251800	Enhancers	NHLF	lung
6	chr9:101250000-101254200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:101250000-101255000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:101250200-101251800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:101250200-101251800	Enhancers	HMEC	breast
10	chr9:101250200-101251800	Enhancers	HSMM	muscle
11	chr9:101250200-101254400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:101250200-101254400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:101250400-101251800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:101250600-101251800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:101250800-101254600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:101251200-101252400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:101251400-101252200	Enhancers	Osteobl	bone
18	chr9:101251400-101255600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:101251600-101251800	Enhancers	NH-A	brain
20	chr9:101251600-101252600	Weak transcription	HSMMtube	muscle
21	chr9:101251600-101253200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:101251600-101253400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:101251600-101254200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:101251600-101258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr9:101251600-101263800	Weak transcription	Placenta Amnion	Placenta Amnion

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