Variant report

Variant	rs2780709
Chromosome Location	chr9:93633147-93633148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93600199..93601130-chr9:93632811..93633736,2	MCF-7	breast:
2	chr9:93536735..93537703-chr9:93632954..93633929,5	MCF-7	breast:
3	chr9:93628438..93632863-chr9:93633146..93636625,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs158690	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1675328	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1675333	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1755937	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1755938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs182343	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs290205	0.83[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs290221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs290222	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs290226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs290228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs290255	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2991215	0.87[JPT][hapmap]
rs9409812	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv430078	chr9:93609668-93642766	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv430079	chr9:93620963-93642766	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93601800-93642200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:93611200-93642200	Weak transcription	Stomach Mucosa	stomach
3	chr9:93617200-93640600	Weak transcription	K562	blood
4	chr9:93617400-93640600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:93617800-93640600	Weak transcription	NHEK	skin
6	chr9:93623600-93642400	Weak transcription	Adipose Nuclei	Adipose
7	chr9:93625000-93636600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:93625000-93642200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:93625200-93642400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:93625600-93636400	Weak transcription	Lung	lung
11	chr9:93625800-93635800	Weak transcription	Esophagus	oesophagus
12	chr9:93626000-93647800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:93627600-93636400	Weak transcription	Small Intestine	intestine
14	chr9:93629200-93640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:93629600-93639400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:93629800-93635600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr9:93629800-93639400	Weak transcription	Colonic Mucosa	Colon
18	chr9:93630000-93634000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:93630000-93634800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr9:93630000-93634800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:93630000-93635200	Weak transcription	Fetal Intestine Small	intestine
22	chr9:93630000-93635200	Weak transcription	Fetal Stomach	stomach
23	chr9:93630000-93635200	Weak transcription	Thymus	Thymus
24	chr9:93630000-93635600	Weak transcription	Fetal Intestine Large	intestine
25	chr9:93630000-93635800	Weak transcription	Spleen	Spleen
26	chr9:93630000-93639400	Weak transcription	Gastric	stomach
27	chr9:93630000-93644800	Weak transcription	Pancreas	Pancrea
28	chr9:93630400-93633400	Genic enhancers	Monocytes-CD14+_RO01746	blood
29	chr9:93630600-93633800	Weak transcription	Fetal Thymus	thymus
30	chr9:93630800-93634800	Weak transcription	GM12878-XiMat	blood
31	chr9:93631000-93633800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:93631200-93634000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:93631200-93634000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:93631400-93633200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:93631400-93634000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:93631400-93634000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:93631400-93634400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr9:93632000-93633400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr9:93632600-93641600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr9:93632800-93633200	Enhancers	Brain Germinal Matrix	brain
41	chr9:93632800-93633600	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr9:93632800-93635200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:93633000-93633400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr9:93633000-93633400	Enhancers	Primary B cells from cord blood	blood
45	chr9:93633000-93633400	Enhancers	Fetal Kidney	kidney
46	chr9:93633000-93635200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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