Variant report

Variant	rs278116
Chromosome Location	chr12:120179590-120179591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10849695	0.83[EUR][1000 genomes]
rs11064890	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064891	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064892	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11064895	0.88[EUR][1000 genomes]
rs17409442	0.85[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs202983	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs278102	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs278104	0.87[EUR][1000 genomes]
rs278107	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs278112	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278113	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278114	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403734	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs434471	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45670	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131896	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs904655	0.84[YRI][hapmap]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
2	chr12:120123400-120182000	Strong transcription	Dnd41	blood
3	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
5	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:120151600-120196600	Weak transcription	Gastric	stomach
7	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
8	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr12:120154800-120186000	Weak transcription	NH-A	brain
10	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:120156800-120182600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:120158000-120186200	Weak transcription	Brain Germinal Matrix	brain
14	chr12:120158000-120186400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:120163600-120186400	Weak transcription	HUVEC	blood vessel
16	chr12:120163800-120180000	Weak transcription	Brain Substantia Nigra	brain
17	chr12:120168600-120181600	Weak transcription	GM12878-XiMat	blood
18	chr12:120171200-120181000	Weak transcription	HSMM	muscle
19	chr12:120171800-120181600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr12:120172000-120181800	Weak transcription	Fetal Lung	lung
21	chr12:120172000-120189400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:120172200-120180600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
24	chr12:120172400-120186200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:120172600-120180800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:120172600-120182000	Weak transcription	Fetal Intestine Small	intestine
27	chr12:120172600-120189600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr12:120173000-120181200	Weak transcription	Brain Anterior Caudate	brain
29	chr12:120173000-120182600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr12:120173000-120194400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr12:120173200-120179600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:120173200-120180600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr12:120173200-120180600	Weak transcription	Fetal Intestine Large	intestine
34	chr12:120173200-120180800	Weak transcription	Brain Hippocampus Middle	brain
35	chr12:120173200-120181800	Weak transcription	HepG2	liver
36	chr12:120173200-120182200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:120173200-120186000	Weak transcription	Fetal Stomach	stomach
38	chr12:120173400-120179600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr12:120173400-120179600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr12:120173400-120179800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr12:120173400-120180600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:120173400-120180600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr12:120173400-120181000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr12:120173400-120181000	Weak transcription	NHLF	lung
45	chr12:120173400-120183200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr12:120173400-120185600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr12:120173400-120185800	Weak transcription	HMEC	breast
48	chr12:120173400-120186200	Weak transcription	Brain Angular Gyrus	brain
49	chr12:120173400-120188600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr12:120173600-120180600	Weak transcription	K562	blood

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