Variant report

Variant	rs2783384
Chromosome Location	chr1:179338909-179338910
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:179338705..179340694-chr1:179346963..179349066,2	K562	blood:
2	chr1:179089949..179090868-chr1:179338641..179339706,4	K562	blood:
3	chr1:179332952..179336574-chr1:179337996..179342859,7	MCF-7	breast:
4	chr1:179074263..179075064-chr1:179338590..179339322,3	K562	blood:
5	chr1:179048422..179049068-chr1:179338591..179339827,3	K562	blood:
6	chr1:179260885..179265137-chr1:179333383..179339387,7	MCF-7	breast:
7	chr1:178511480..178512262-chr1:179338579..179339345,2	K562	blood:
8	chr1:179220558..179221464-chr1:179338599..179339569,5	MCF-7	breast:
9	chr1:179220394..179221467-chr1:179338651..179339953,9	MCF-7	breast:
10	chr1:179333390..179336673-chr1:179338029..179341473,3	MCF-7	breast:
11	chr1:179338659..179339560-chr1:179568499..179569458,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213057	Chromatin interaction
ENSG00000184909	Chromatin interaction
ENSG00000162779	Chromatin interaction
ENSG00000263633	Chromatin interaction
ENSG00000057252	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2484437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61742530	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2762031	chr1:179323738-179375197	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	nsv518403	chr1:179323919-179371973	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv548279	chr1:179323919-179390148	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv33901	chr1:179328708-179344905	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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