Variant report

Variant	rs2784870
Chromosome Location	chr6:163781722-163781723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1028354	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1028355	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13204618	0.84[ASN][1000 genomes]
rs13220178	0.91[ASN][1000 genomes]
rs1336227	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1541142	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1541143	0.85[ASN][1000 genomes]
rs1628413	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737310	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737312	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1737313	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1737315	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1764000	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1764001	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1764003	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1764005	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1764006	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2473220	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35570774	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4708994	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs760890	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9365559	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9365562	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945534	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163776400-163783400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:163777400-163786800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:163777400-163787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:163777400-163790000	Weak transcription	Spleen	Spleen
5	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:163778000-163788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:163778400-163782000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:163778400-163783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:163778400-163790800	Weak transcription	Right Atrium	heart
10	chr6:163778600-163782000	Weak transcription	Brain Anterior Caudate	brain
11	chr6:163778600-163783400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:163780400-163782000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:163780400-163782200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:163780400-163783400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:163780800-163782000	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:163781400-163783200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:163781400-163783400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:163781400-163783400	Enhancers	Brain Hippocampus Middle	brain
19	chr6:163781600-163782400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:163781600-163783400	Enhancers	Brain Substantia Nigra	brain

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