Variant report

Variant	rs2787625
Chromosome Location	chr13:65835742-65835743
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1333175	1.00[AMR][1000 genomes]
rs2116276	1.00[AMR][1000 genomes]
rs2787621	1.00[AMR][1000 genomes]
rs7323225	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045954	chr13:65495013-65842827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1046706	chr13:65495013-66210226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541809	chr13:65495013-66210226	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1042545	chr13:65686275-66219510	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1044847	chr13:65742475-65876390	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1046441	chr13:65760197-65846966	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv900378	chr13:65792277-65876631	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1054603	chr13:65798271-66427019	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv541810	chr13:65798271-66427019	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65834200-65836600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr13:65834400-65836000	Enhancers	Fetal Lung	lung
3	chr13:65834800-65835800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:65834800-65836000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:65835000-65835800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:65835000-65835800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:65835000-65836000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:65835200-65835800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:65835200-65835800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:65835200-65835800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr13:65835200-65836000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:65835200-65836000	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr13:65835400-65835800	Enhancers	Brain Hippocampus Middle	brain
14	chr13:65835400-65835800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr13:65835400-65835800	Enhancers	Dnd41	blood
16	chr13:65835400-65836000	Enhancers	Brain Substantia Nigra	brain
17	chr13:65835600-65835800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:65835600-65835800	Enhancers	Adipose Nuclei	Adipose
19	chr13:65835600-65835800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr13:65835600-65836000	Enhancers	Brain Cingulate Gyrus	brain
21	chr13:65835600-65836000	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr13:65835600-65836600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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