Variant report

Variant	rs2788145
Chromosome Location	chr1:212070378-212070379
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6703304	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212063200-212074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:212068600-212070400	Enhancers	A549	lung
3	chr1:212069200-212071400	Enhancers	HepG2	liver
4	chr1:212069200-212075200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:212069400-212073800	Weak transcription	Fetal Intestine Large	intestine
6	chr1:212069600-212073800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:212070000-212071000	Enhancers	Fetal Muscle Leg	muscle
8	chr1:212070200-212070400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr1:212070200-212070800	Enhancers	Osteobl	bone
10	chr1:212070200-212071000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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