Variant report

Variant	rs2788918
Chromosome Location	chr20:16234731-16234732
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1329824	0.87[EUR][1000 genomes]
rs1360213	0.86[EUR][1000 genomes]
rs1411201	0.87[EUR][1000 genomes]
rs1541065	0.88[EUR][1000 genomes]
rs2144897	0.88[EUR][1000 genomes]
rs2144898	0.88[EUR][1000 genomes]
rs2144899	0.88[EUR][1000 genomes]
rs2144900	0.88[EUR][1000 genomes]
rs2749752	0.87[EUR][1000 genomes]
rs2788910	0.86[EUR][1000 genomes]
rs2788912	0.88[EUR][1000 genomes]
rs4814458	0.84[EUR][1000 genomes]
rs6080186	0.86[EUR][1000 genomes]
rs6080188	0.86[EUR][1000 genomes]
rs6110975	0.84[EUR][1000 genomes]
rs6131804	0.87[EUR][1000 genomes]
rs6135708	0.84[EUR][1000 genomes]
rs62198067	0.85[EUR][1000 genomes]
rs883970	0.87[EUR][1000 genomes]
rs913828	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833930	chr20:16134347-16302763	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16234200-16235000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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