The 2.0 version of rSNPBase

Variant report

Variant rs2793462
Chromosome Location chr1:227063400-227063401
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227059000-227066800 Weak transcription Aorta Aorta
2 chr1:227059200-227063600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:227059200-227069000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr1:227059400-227063400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr1:227059400-227063400 Weak transcription NH-A brain
6 chr1:227059400-227069600 Weak transcription Primary B cells from cord blood blood
7 chr1:227059600-227066000 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:227059600-227068400 Weak transcription Brain Hippocampus Middle brain
9 chr1:227059600-227069200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:227059600-227070200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:227059800-227063400 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr1:227059800-227063400 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr1:227059800-227063400 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:227059800-227063600 Weak transcription Colonic Mucosa Colon
15 chr1:227059800-227064400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr1:227059800-227064400 Weak transcription Primary B cells from peripheral blood blood
17 chr1:227059800-227064600 Enhancers Fetal Adrenal Gland Adrenal Gland
18 chr1:227059800-227064600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:227059800-227064600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:227059800-227065000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:227059800-227067400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr1:227059800-227070200 Weak transcription Osteobl bone
23 chr1:227059800-227075600 Weak transcription Brain Substantia Nigra brain
24 chr1:227059800-227095000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:227060000-227063400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:227060000-227063400 Weak transcription Stomach Smooth Muscle stomach
27 chr1:227060000-227063800 Weak transcription Brain Anterior Caudate brain
28 chr1:227060000-227064600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr1:227060000-227064600 Weak transcription Brain Cingulate Gyrus brain
30 chr1:227060000-227064600 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:227060000-227065000 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr1:227060000-227065000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:227060000-227065000 Weak transcription HMEC breast
34 chr1:227060000-227068200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
35 chr1:227060000-227068200 Weak transcription Rectal Smooth Muscle rectum
36 chr1:227060000-227068400 Weak transcription Brain Angular Gyrus brain
37 chr1:227060000-227068800 Weak transcription NHDF-Ad bronchial
38 chr1:227060000-227069400 Weak transcription Esophagus oesophagus
39 chr1:227060000-227069600 Weak transcription Right Atrium heart
40 chr1:227060000-227069800 Weak transcription Monocytes-CD14+_RO01746 blood
41 chr1:227060000-227070000 Weak transcription Small Intestine intestine
42 chr1:227060000-227070600 Weak transcription Fetal Brain Male brain
43 chr1:227060200-227070200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:227060400-227066200 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:227060400-227067000 Weak transcription Duodenum Mucosa Duodenum
46 chr1:227060400-227068400 Weak transcription Colon Smooth Muscle Colon
47 chr1:227060400-227069200 Weak transcription GM12878-XiMat blood
48 chr1:227060400-227073800 Weak transcription HepG2 liver
49 chr1:227060400-227077600 Weak transcription Brain Germinal Matrix brain
50 chr1:227060600-227063400 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015