Variant report

Variant	rs2795991
Chromosome Location	chrX:109377000-109377001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12841904	1.00[JPT][hapmap]
rs1623948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs1770343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[TSI][hapmap]
rs1774690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap]
rs1774691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs2791640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs2795992	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2795993	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs2795994	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap]
rs2795995	0.87[CHB][hapmap]
rs34247395	1.00[JPT][hapmap]
rs4421522	0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs4893450	0.93[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5942626	0.87[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs5942628	0.84[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs5942629	0.84[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs5942880	1.00[JPT][hapmap]
rs5942890	0.84[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs5942896	0.84[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs5942897	0.85[ASW][hapmap];0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.94[YRI][hapmap]
rs5942899	0.87[CHB][hapmap]
rs5985446	0.93[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs946820	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[TSI][hapmap]
rs946821	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs946822	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109267200-109377800	Weak transcription	Primary T cells fromperipheralblood	blood
2	chrX:109331200-109382400	Weak transcription	Right Ventricle	heart
3	chrX:109334000-109402600	Weak transcription	Primary B cells from cord blood	blood
4	chrX:109346800-109378000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chrX:109350200-109385200	Weak transcription	Pancreas	Pancrea
6	chrX:109351600-109380200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chrX:109352400-109402400	Weak transcription	Primary B cells from peripheral blood	blood
8	chrX:109352400-109414000	Weak transcription	Dnd41	blood
9	chrX:109353200-109389000	Weak transcription	Hela-S3	cervix
10	chrX:109354200-109382400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chrX:109356400-109377200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chrX:109358000-109382200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chrX:109363400-109377000	Weak transcription	K562	blood
14	chrX:109363600-109392600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chrX:109367200-109396200	Weak transcription	Duodenum Mucosa	Duodenum
16	chrX:109367800-109389200	Weak transcription	Fetal Intestine Large	intestine
17	chrX:109368000-109378400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chrX:109368400-109385200	Weak transcription	Brain Anterior Caudate	brain
19	chrX:109369600-109382000	Weak transcription	Left Ventricle	heart
20	chrX:109369600-109388200	Weak transcription	Fetal Intestine Small	intestine
21	chrX:109369800-109387800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chrX:109371000-109386000	Weak transcription	Ovary	ovary
23	chrX:109371400-109385200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chrX:109373600-109388600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chrX:109374000-109389200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chrX:109374400-109389400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chrX:109374600-109382400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chrX:109375600-109389400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chrX:109376200-109382000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chrX:109376200-109384200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chrX:109376200-109385000	Weak transcription	HMEC	breast
32	chrX:109376800-109377400	Strong transcription	A549	lung
33	chrX:109376800-109377600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chrX:109376800-109377600	Enhancers	GM12878-XiMat	blood
35	chrX:109376800-109378000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chrX:109376800-109378000	Enhancers	Rectal Mucosa Donor 31	rectum
37	chrX:109376800-109392000	Weak transcription	Primary T cells from cord blood	blood
38	chrX:109377000-109378600	Strong transcription	K562	blood
39	chrX:109377000-109382200	Weak transcription	Fetal Stomach	stomach

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