Variant report

Variant	rs279621
Chromosome Location	chr8:122788769-122788770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs279613	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279614	1.00[AFR][1000 genomes]
rs279619	0.93[EUR][1000 genomes]
rs279620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242327	1.00[CHB][hapmap]
rs6999640	1.00[CHB][hapmap]
rs6999793	1.00[CHB][hapmap]
rs7012540	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs279621	LRRC31	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122785600-122808400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:122788000-122789200	Enhancers	Hela-S3	cervix
3	chr8:122788200-122788800	Active TSS	Fetal Brain Male	brain
4	chr8:122788200-122789200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:122788200-122789200	Enhancers	NHEK	skin
6	chr8:122788400-122789200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:122788600-122788800	ZNF genes & repeats	HSMM	muscle
8	chr8:122788600-122789200	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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