The 2.0 version of rSNPBase

Variant report

Variant rs2799569
Chromosome Location chr1:77638037-77638038
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77595400-77640400 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr1:77606200-77651600 Weak transcription Aorta Aorta
3 chr1:77616200-77663200 Weak transcription Brain Hippocampus Middle brain
4 chr1:77619000-77640200 Weak transcription A549 lung
5 chr1:77621000-77641600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:77623200-77639400 Weak transcription Fetal Lung lung
7 chr1:77623400-77641000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:77625800-77640000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:77626000-77639800 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:77626000-77640600 Weak transcription Brain Substantia Nigra brain
11 chr1:77626000-77662600 Weak transcription Thymus Thymus
12 chr1:77626000-77684200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:77626200-77639400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:77626800-77639400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr1:77626800-77668000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr1:77626800-77674800 Weak transcription Ovary ovary
17 chr1:77626800-77676200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr1:77627200-77638600 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr1:77627200-77641000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:77629000-77642000 Weak transcription Primary T helper cells PMA-I stimulated --
21 chr1:77630400-77639200 Weak transcription Dnd41 blood
22 chr1:77630400-77641200 Weak transcription NH-A brain
23 chr1:77630800-77638800 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr1:77630800-77640200 Weak transcription Primary B cells from cord blood blood
25 chr1:77630800-77641200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:77630800-77652000 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:77630800-77660600 Weak transcription Left Ventricle heart
28 chr1:77631800-77660600 Weak transcription Primary T cells fromperipheralblood blood
29 chr1:77632800-77640800 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr1:77634400-77656600 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr1:77636600-77640200 Weak transcription Osteobl bone
32 chr1:77636800-77640200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:77637800-77638200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:77637800-77638200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:77637800-77640400 Strong transcription Primary T cells from cord blood blood
36 chr1:77637800-77647800 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:77638000-77638200 ZNF genes & repeats H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr1:77638000-77638200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
39 chr1:77638000-77638200 Strong transcription Primary hematopoietic stem cells short term culture blood
40 chr1:77638000-77638200 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:77638000-77638400 ZNF genes & repeats Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015