Variant report

Variant	rs2801526
Chromosome Location	chr10:90876126-90876127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12770042	1.00[ASN][1000 genomes]
rs12770067	1.00[ASN][1000 genomes]
rs12772488	1.00[ASN][1000 genomes]
rs12777813	1.00[ASN][1000 genomes]
rs1937325	0.83[ASN][1000 genomes]
rs1937337	1.00[CHD][hapmap];0.88[GIH][hapmap];0.83[ASN][1000 genomes]
rs1937345	0.83[ASN][1000 genomes]
rs2154254	0.83[ASN][1000 genomes]
rs2245863	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2247441	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.89[MKK][hapmap];0.84[TSI][hapmap];0.88[YRI][hapmap]
rs2253622	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2255470	0.83[ASN][1000 genomes]
rs2489881	0.83[ASN][1000 genomes]
rs2801525	1.00[ASN][1000 genomes]
rs2801534	0.83[ASN][1000 genomes]
rs2801535	0.83[ASN][1000 genomes]
rs2801537	0.83[ASN][1000 genomes]
rs2841010	1.00[ASN][1000 genomes]
rs2841014	0.83[ASN][1000 genomes]
rs2841015	0.83[ASN][1000 genomes]
rs2841022	0.83[ASN][1000 genomes]
rs2841027	1.00[ASN][1000 genomes]
rs2841028	0.83[ASN][1000 genomes]
rs2863224	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2863225	0.83[ASN][1000 genomes]
rs7079258	1.00[ASN][1000 genomes]
rs7082593	0.83[ASN][1000 genomes]
rs7094490	0.83[ASN][1000 genomes]
rs7099481	0.83[ASN][1000 genomes]
rs7099595	0.87[CHD][hapmap]
rs9325605	0.83[GIH][hapmap];0.83[ASN][1000 genomes]
rs9420506	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv467416	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv551842	chr10:90815975-90889997	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2801526	SNORD68	trans	parietal	SCAN
rs2801526	LIPN	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90874600-90878400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr10:90874600-90879400	Weak transcription	Adipose Nuclei	Adipose
3	chr10:90875000-90877600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:90875000-90878200	Enhancers	NHEK	skin
5	chr10:90875000-90878600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:90875200-90876200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:90875200-90876400	Enhancers	NH-A	brain
8	chr10:90875200-90878600	Enhancers	HMEC	breast
9	chr10:90875200-90878600	Enhancers	NHDF-Ad	bronchial
10	chr10:90875200-90878600	Enhancers	Osteobl	bone
11	chr10:90875200-90878800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:90875200-90878800	Enhancers	HSMM	muscle
13	chr10:90875400-90876400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:90875400-90878800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:90875400-90878800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:90875600-90878600	Enhancers	HSMMtube	muscle
17	chr10:90875600-90878800	Enhancers	HUVEC	blood vessel
18	chr10:90875800-90876600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:90876000-90876400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:90876000-90876400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:90876000-90877400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:90876000-90878400	Enhancers	NHLF	lung
23	chr10:90876000-90878600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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