Variant report

Variant	rs2801799
Chromosome Location	chr13:37647092-37647093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1199951	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1199956	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1199962	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs1199963	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1199972	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1199974	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1199975	1.00[YRI][hapmap]
rs1199979	0.86[AMR][1000 genomes]
rs1199981	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1199982	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1199983	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1199984	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1199986	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1199987	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1199988	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1199989	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1336755	0.84[EUR][1000 genomes]
rs1543738	1.00[CEU][hapmap]
rs1764483	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1764484	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1764486	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1764487	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1924422	0.90[CEU][hapmap]
rs1924426	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1937761	0.90[CEU][hapmap]
rs2093817	1.00[CEU][hapmap]
rs2147169	0.90[CEU][hapmap]
rs2181788	0.81[CEU][hapmap]
rs2211618	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2323165	0.90[CEU][hapmap]
rs2669893	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2769543	0.89[CEU][hapmap]
rs2785620	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs2997189	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2997190	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3858859	0.84[EUR][1000 genomes]
rs4291799	0.90[CEU][hapmap];0.84[AFR][1000 genomes]
rs4941854	0.90[CEU][hapmap]
rs4941856	0.90[CEU][hapmap]
rs4943441	1.00[CEU][hapmap]
rs6420362	1.00[YRI][hapmap]
rs6563506	0.81[CEU][hapmap]
rs6563507	0.90[CEU][hapmap]
rs6563508	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs675108	0.82[CEU][hapmap]
rs73175079	0.91[AFR][1000 genomes]
rs7317750	0.90[CEU][hapmap]
rs7321129	0.90[CEU][hapmap]
rs7326688	0.84[EUR][1000 genomes]
rs7334233	0.91[AFR][1000 genomes]
rs7338929	0.90[CEU][hapmap]
rs7339296	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7983986	0.90[CEU][hapmap]
rs7989205	0.90[CEU][hapmap]
rs7989380	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7991057	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs7997310	1.00[CEU][hapmap]
rs9315459	1.00[YRI][hapmap]
rs9532001	0.90[CEU][hapmap]
rs9532004	0.90[CEU][hapmap]
rs9532005	0.90[CEU][hapmap];0.91[AFR][1000 genomes]
rs9547707	0.90[CEU][hapmap]
rs9547715	0.90[CEU][hapmap]
rs9547717	0.81[CEU][hapmap]
rs9547718	0.90[CEU][hapmap]
rs9547721	0.81[EUR][1000 genomes]
rs9547725	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9576154	0.90[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9576162	0.84[EUR][1000 genomes]
rs9603121	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3377840	chr13:37631001-37656330	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2801799	SUPT20H	cis	Whole Blood	GTEx
rs2801799	FAM48A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37646200-37647800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links