Variant report

Variant	rs2802648
Chromosome Location	chr1:215195013-215195014
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10494989	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10779633	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1377173	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1452608	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1452609	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1452610	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2262937	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601607	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2601609	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601610	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601611	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601612	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601613	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601614	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601615	0.81[AMR][1000 genomes]
rs2601616	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601617	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601618	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601619	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601620	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601621	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2601622	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2601623	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2601624	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2601625	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2601636	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2601638	0.80[AFR][1000 genomes]
rs2601639	0.80[AFR][1000 genomes]
rs2601640	0.80[AFR][1000 genomes]
rs2601646	0.81[AFR][1000 genomes]
rs2802642	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2802643	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2802644	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2802647	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802649	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2802650	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2802651	0.81[AMR][1000 genomes]
rs2841575	0.82[AFR][1000 genomes]
rs2841592	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841596	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841597	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841598	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841599	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841600	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841601	0.83[AMR][1000 genomes]
rs2841602	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841604	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2841605	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841606	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841607	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841608	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841609	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841610	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841611	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2841613	0.80[AFR][1000 genomes]
rs4294386	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4339836	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4348692	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4356023	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215177200-215211200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:215188800-215195200	Weak transcription	NHDF-Ad	bronchial
3	chr1:215192400-215195200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:215192400-215195200	Weak transcription	NHLF	lung
5	chr1:215192400-215195400	Weak transcription	Osteobl	bone
6	chr1:215195000-215195600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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