Variant report

Variant	rs2803245
Chromosome Location	chr1:63333210-63333211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10159426	0.84[CHB][hapmap]
rs10889383	0.84[CHB][hapmap]
rs11208040	0.83[JPT][hapmap]
rs11208047	0.87[CHB][hapmap]
rs11587081	0.85[JPT][hapmap]
rs1333733	0.84[CHB][hapmap]
rs17316247	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17316381	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17316576	0.84[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs6663454	1.00[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs6679582	0.84[CHB][hapmap]
rs6683423	0.89[CHB][hapmap]
rs6687943	0.83[CHB][hapmap]
rs6699457	0.84[CHB][hapmap]
rs7522726	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830015	chr1:63261143-63455296	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63298400-63345800	Weak transcription	Left Ventricle	heart
2	chr1:63310000-63340600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:63312000-63335200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:63312200-63335000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:63324200-63334000	Weak transcription	Fetal Intestine Large	intestine
6	chr1:63326600-63333800	Weak transcription	Primary B cells from cord blood	blood
7	chr1:63330200-63333400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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