Variant report

Variant	rs2805775
Chromosome Location	chr9:100384126-100384127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr9:100383807-100384198	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
TSTD2	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10983030	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10983447	0.84[EUR][1000 genomes]
rs1800975	0.88[EUR][1000 genomes]
rs2026132	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2036959	0.81[EUR][1000 genomes]
rs2149986	0.81[ASN][1000 genomes]
rs2668792	0.81[EUR][1000 genomes]
rs2668793	0.81[EUR][1000 genomes]
rs2668798	0.84[EUR][1000 genomes]
rs2773347	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2773351	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2805767	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2805777	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2805779	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2805791	0.87[ASN][1000 genomes]
rs2805801	0.81[ASN][1000 genomes]
rs2805803	0.85[ASN][1000 genomes]
rs2805806	0.81[ASN][1000 genomes]
rs2805824	0.81[EUR][1000 genomes]
rs2805825	0.81[EUR][1000 genomes]
rs2805826	0.81[EUR][1000 genomes]
rs2805828	0.87[EUR][1000 genomes]
rs2805829	0.87[EUR][1000 genomes]
rs2805832	0.87[EUR][1000 genomes]
rs2805837	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2805839	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2808668	0.87[EUR][1000 genomes]
rs2808673	0.87[EUR][1000 genomes]
rs2808675	0.87[EUR][1000 genomes]
rs2808677	0.86[EUR][1000 genomes]
rs2808685	0.81[EUR][1000 genomes]
rs2808686	0.81[EUR][1000 genomes]
rs2808689	0.81[EUR][1000 genomes]
rs2808691	0.81[EUR][1000 genomes]
rs2808703	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6478325	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs913912	0.88[ASN][1000 genomes]
rs958346	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100361800-100389000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:100361800-100394000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:100363000-100394600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:100365800-100389400	Weak transcription	Stomach Mucosa	stomach
5	chr9:100367400-100386200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:100367400-100387000	Weak transcription	HMEC	breast
7	chr9:100367600-100390400	Weak transcription	Small Intestine	intestine
8	chr9:100367800-100384400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:100368200-100386200	Weak transcription	Esophagus	oesophagus
10	chr9:100368200-100394000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:100368200-100394200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr9:100368400-100387800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:100368400-100394000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:100369000-100386400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:100369000-100388200	Strong transcription	Fetal Muscle Leg	muscle
16	chr9:100372200-100388200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:100372800-100387600	Weak transcription	Psoas Muscle	Psoas
18	chr9:100372800-100394000	Weak transcription	Colonic Mucosa	Colon
19	chr9:100373000-100389400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr9:100373200-100386600	Weak transcription	HUVEC	blood vessel
21	chr9:100373400-100389400	Weak transcription	NHDF-Ad	bronchial
22	chr9:100374000-100386200	Weak transcription	Osteobl	bone
23	chr9:100374000-100394000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:100374200-100384400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:100374400-100386200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr9:100374600-100393800	Weak transcription	Fetal Kidney	kidney
27	chr9:100375600-100387600	Weak transcription	NH-A	brain
28	chr9:100376000-100387400	Weak transcription	Brain Substantia Nigra	brain
29	chr9:100377400-100394000	Weak transcription	NHEK	skin
30	chr9:100377800-100386200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:100377800-100386200	Weak transcription	Fetal Brain Male	brain
32	chr9:100378000-100386200	Weak transcription	Brain Anterior Caudate	brain
33	chr9:100378000-100386200	Weak transcription	K562	blood
34	chr9:100378000-100387600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:100378400-100384800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:100378400-100388200	Strong transcription	Fetal Lung	lung
37	chr9:100378400-100388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:100378600-100387800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr9:100378600-100388200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr9:100378600-100388400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:100379000-100384200	Weak transcription	Spleen	Spleen
42	chr9:100379000-100386200	Weak transcription	Thymus	Thymus
43	chr9:100379000-100387600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr9:100379200-100386400	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:100379200-100388000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:100379400-100388200	Strong transcription	Primary T cells from cord blood	blood
47	chr9:100380200-100386400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:100380200-100387600	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:100380400-100384200	Weak transcription	Fetal Thymus	thymus
50	chr9:100380400-100384200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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