Variant report

Variant	rs2805805
Chromosome Location	chr9:100336360-100336361
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:100335698..100337824-chr9:100348550..100351142,2	MCF-7	breast:
2	chr9:100331492..100333368-chr9:100335840..100338156,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1536950	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2149984	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2254733	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2805792	0.81[EUR][1000 genomes]
rs2805793	0.84[AMR][1000 genomes]
rs2805802	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2805804	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2805808	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2805810	0.89[ASN][1000 genomes]
rs7863516	0.88[ASN][1000 genomes]
rs932916	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100326800-100337000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:100327000-100349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:100327200-100340000	Weak transcription	Fetal Stomach	stomach
4	chr9:100330400-100339400	Weak transcription	Brain Germinal Matrix	brain
5	chr9:100332600-100336400	Strong transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:100333400-100338400	Strong transcription	Ovary	ovary
7	chr9:100333400-100340800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:100333600-100339400	Weak transcription	Pancreas	Pancrea
9	chr9:100333600-100341400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:100333600-100361800	Weak transcription	Gastric	stomach
11	chr9:100334000-100337400	Weak transcription	Adipose Nuclei	Adipose
12	chr9:100334200-100340800	Weak transcription	Psoas Muscle	Psoas
13	chr9:100334200-100356000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:100334400-100337000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:100334400-100338600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr9:100334400-100356000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr9:100334400-100356400	Weak transcription	HSMMtube	muscle
18	chr9:100334600-100337400	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:100334600-100337600	Weak transcription	GM12878-XiMat	blood
20	chr9:100334600-100337800	Strong transcription	Fetal Brain Female	brain
21	chr9:100334600-100339400	Weak transcription	Lung	lung
22	chr9:100334600-100353600	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:100334800-100338600	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:100334800-100355600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:100335000-100341800	Weak transcription	Fetal Heart	heart
26	chr9:100335400-100338200	Strong transcription	Left Ventricle	heart
27	chr9:100335400-100338400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr9:100335400-100341000	Weak transcription	Right Ventricle	heart
29	chr9:100335600-100338600	Weak transcription	Liver	Liver
30	chr9:100335600-100356600	Weak transcription	Brain Angular Gyrus	brain
31	chr9:100336000-100337400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:100336000-100337800	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:100336200-100337400	Weak transcription	Brain Anterior Caudate	brain
34	chr9:100336200-100337400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:100336200-100340200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:100336200-100349200	Weak transcription	K562	blood
37	chr9:100336200-100356200	Weak transcription	Aorta	Aorta
38	chr9:100336200-100360000	Weak transcription	Brain Substantia Nigra	brain

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