Variant report

Variant	rs2805820
Chromosome Location	chr9:100492041-100492042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100476999..100478674-chr9:100490072..100492132,2	MCF-7	breast:
2	chr9:100491615..100493759-chr9:100496731..100498823,2	K562	blood:
3	chr9:100490447..100493759-chr9:100496731..100499744,4	K562	blood:
4	chr9:100490724..100492306-chr9:100494376..100496011,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs2244833	1.00[EUR][1000 genomes]
rs2668794	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2668795	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2668796	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2668797	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2668799	1.00[EUR][1000 genomes]
rs2668802	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2668803	0.99[EUR][1000 genomes]
rs2668804	0.99[EUR][1000 genomes]
rs2668805	0.99[EUR][1000 genomes]
rs2805768	0.96[EUR][1000 genomes]
rs2805769	0.96[EUR][1000 genomes]
rs2805770	0.95[EUR][1000 genomes]
rs2805771	0.98[EUR][1000 genomes]
rs2805773	0.99[EUR][1000 genomes]
rs2805778	0.99[EUR][1000 genomes]
rs2805780	0.99[EUR][1000 genomes]
rs2805781	0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2805782	0.98[EUR][1000 genomes]
rs2805784	0.99[EUR][1000 genomes]
rs2805789	0.99[EUR][1000 genomes]
rs2805790	0.99[EUR][1000 genomes]
rs2805794	0.99[EUR][1000 genomes]
rs2805795	0.89[EUR][1000 genomes]
rs2805796	0.99[EUR][1000 genomes]
rs2805797	0.99[EUR][1000 genomes]
rs2805798	0.99[EUR][1000 genomes]
rs2805799	0.99[EUR][1000 genomes]
rs2805800	0.99[EUR][1000 genomes]
rs2805809	0.99[EUR][1000 genomes]
rs2805811	0.99[EUR][1000 genomes]
rs2805812	0.99[EUR][1000 genomes]
rs2805813	0.99[EUR][1000 genomes]
rs2805814	0.99[EUR][1000 genomes]
rs2805815	0.99[EUR][1000 genomes]
rs2805816	0.99[EUR][1000 genomes]
rs2805817	0.99[EUR][1000 genomes]
rs2805818	1.00[EUR][1000 genomes]
rs2805822	1.00[EUR][1000 genomes]
rs2808681	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2808682	0.98[EUR][1000 genomes]
rs2808684	0.98[EUR][1000 genomes]
rs2808688	1.00[EUR][1000 genomes]
rs2808693	1.00[EUR][1000 genomes]
rs2808695	1.00[EUR][1000 genomes]
rs2808696	0.99[EUR][1000 genomes]
rs2808697	1.00[EUR][1000 genomes]
rs2808698	1.00[EUR][1000 genomes]
rs2808699	0.96[EUR][1000 genomes]
rs2808700	0.96[EUR][1000 genomes]
rs2808702	0.95[EUR][1000 genomes]
rs62560521	0.85[EUR][1000 genomes]
rs7864297	0.91[EUR][1000 genomes]
rs7874554	0.99[EUR][1000 genomes]
rs7875449	0.99[EUR][1000 genomes]
rs7875482	0.99[EUR][1000 genomes]
rs953198	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100491000-100503200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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