Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10159302	1.00[CHB][hapmap]
rs10493218	1.00[CHB][hapmap]
rs10493224	1.00[CEU][hapmap]
rs11800574	1.00[CHB][hapmap]
rs11803541	1.00[CHB][hapmap]
rs11807631	1.00[CHB][hapmap]
rs12129740	1.00[CEU][hapmap]
rs1424471	1.00[CHB][hapmap]
rs17096836	1.00[CHB][hapmap]
rs17115722	1.00[CHB][hapmap]
rs17115739	1.00[CHB][hapmap]
rs17115757	1.00[CHB][hapmap]
rs17115765	1.00[CHB][hapmap]
rs17115767	1.00[CHB][hapmap]
rs17115788	1.00[CEU][hapmap]
rs17115791	1.00[CEU][hapmap]
rs17115804	1.00[CEU][hapmap]
rs17115834	1.00[CHB][hapmap]
rs17115844	1.00[CHB][hapmap]
rs17115846	1.00[CEU][hapmap]
rs17838097	1.00[CHB][hapmap]
rs2245012	0.98[AFR][1000 genomes]
rs2691450	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2691462	1.00[MEX][hapmap]
rs2805878	1.00[MEX][hapmap]
rs3738552	1.00[CHB][hapmap]
rs3850553	1.00[CHB][hapmap]
rs4912243	1.00[CHB][hapmap]
rs507466	1.00[CHB][hapmap]
rs6657926	1.00[CHB][hapmap]
rs72909300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436131	0.85[LWK][hapmap];0.86[MKK][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57932800-57942400	Weak transcription	Stomach Mucosa	stomach
2	chr1:57939400-57942400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:57940200-57949600	Weak transcription	NHDF-Ad	bronchial
4	chr1:57940800-57954800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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