Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MARC1-1	chr1:221004035-221004249	ENSG00000238078
2	lnc-MARC1-1	chr1:221004035-221004249	XLOC_000572

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1874114	0.80[CEU][hapmap]
rs2642427	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2642431	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2642449	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807840	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2807841	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2807846	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2807849	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220984600-221006600	Weak transcription	Psoas Muscle	Psoas
2	chr1:220995600-221005400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:220998200-221004200	Weak transcription	Aorta	Aorta
4	chr1:221001000-221004200	Enhancers	Right Atrium	heart
5	chr1:221001000-221004800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:221001800-221005000	Weak transcription	Lung	lung
7	chr1:221001800-221006400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:221002200-221004200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:221002200-221004200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:221002800-221006600	Weak transcription	Adipose Nuclei	Adipose
11	chr1:221002800-221006600	Weak transcription	Fetal Stomach	stomach
12	chr1:221002800-221016200	Weak transcription	Fetal Lung	lung
13	chr1:221003000-221005400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:221003400-221004400	Weak transcription	Left Ventricle	heart
15	chr1:221003400-221005000	Weak transcription	Liver	Liver
16	chr1:221003400-221006400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:221003600-221005400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:221003600-221006200	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:221003600-221012200	Weak transcription	Fetal Heart	heart
20	chr1:221003800-221004800	Strong transcription	Monocytes-CD14+_RO01746	blood

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