Variant report

Variant	rs2807870
Chromosome Location	chr1:221096759-221096760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1335930	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1537806	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2484698	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2484699	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221093800-221097000	Enhancers	Primary hematopoietic stem cells	blood
2	chr1:221094200-221097200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:221094400-221099200	Weak transcription	Psoas Muscle	Psoas
4	chr1:221094800-221096800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:221095600-221100800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:221095800-221098000	Weak transcription	NHDF-Ad	bronchial
7	chr1:221095800-221099000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr1:221096600-221096800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr1:221096600-221099200	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:221096600-221099600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:221096600-221100200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:221096600-221100800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:221096600-221100800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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