Variant report

Variant	rs2807882
Chromosome Location	chr1:221132893-221132894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11118627	1.00[EUR][1000 genomes]
rs11118629	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11118630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1932477	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2484702	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2992648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2992651	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3013555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs715677	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221131200-221133800	Weak transcription	K562	blood
2	chr1:221131200-221134800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:221131200-221134800	Weak transcription	NH-A	brain
4	chr1:221131400-221134800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:221131400-221134800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:221131600-221134000	Weak transcription	HSMMtube	muscle
7	chr1:221131600-221134600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:221131600-221134800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:221131600-221134800	Weak transcription	HSMM	muscle
10	chr1:221131600-221135200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:221132000-221134600	Weak transcription	Osteobl	bone
12	chr1:221132200-221134800	Weak transcription	NHLF	lung
13	chr1:221132400-221133600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:221132400-221133800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:221132400-221134200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:221132400-221134800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:221132600-221133800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:221132600-221133800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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